VTK4IE.bib

@manual{kitware2003,
  title = {The Visualization Toolkit User's Guide},
  organization = {Kitware, Inc.},
  year = {2003},
  month = {January}
}

@inproceedings{Leigh98limbo/vtk,
    author = {Jason Leigh and Paul J. Rajlich and Robert J. Stein and Andrew E. Johnson and Thomas A. Defanti},
    title = {LIMBO/VTK: A Tool for Rapid Tele-Immersive Visualization},
    booktitle = {CDROM proc. of IEEE Visualization '98, Research Triangle Park, NC},
    year = {1998},
    pages = {18--23}
}

@inproceedings{van2000vista,
  title={ViSTA: a multimodal, platform-independent VR-Toolkit based on WTK, VTK, and MPI},
  author={van Reimersdahl, Thomas and Kuhlen, Torsten and Gerndt, Andreas and Henrichs, Jorg and Bischof, Christian},
  booktitle={Proceedings of the 4th International Immersive Projection Technology Workshop (IPT)},
  year={2000}
}

@misc{GeometryViewer,
author = {Jhaveri, Sankhesh and Lonie, David and O'Leary, Patrick},
title = {{GeometryViewer}},
xhowpublished = {Online},
year = {2016},
howpublished = {Online at \textit{https://github.com/VruiVTK/GeometryViewer}}
}

@misc{VolumeViewer,
author = {Jhaveri, Sankhesh and Lonie, David and O'Leary, Patrick},
title = {{VolumeViewer}},
xhowpublished = {Online},
year = {2016},
howpublished = {Online at \textit{https://github.com/VruiVTK/VolumeViewer}}
}

@misc{MooseViewer,
author = {Jhaveri, Sankhesh and Lonie, David and O'Leary, Patrick},
title = {{MooseViewer}},
xhowpublished = {Online},
year = {2016},
howpublished = {Online at \textit{https://github.com/VruiVTK/MooseViewer}}
}

@article{Gaston:2015,
title = "Physics-based multiscale coupling for full core nuclear reactor simulation ",
journal = "Annals of Nuclear Energy ",
volume = "84",
number = "",
pages = "45 - 54",
year = "2015",
note = "Multi-Physics Modelling of \{LWR\} Static and Transient Behaviour ",
issn = "0306-4549",
doi = "http://dx.doi.org/10.1016/j.anucene.2014.09.060",
author = "Derek R. Gaston and Cody J. Permann and John W. Peterson and Andrew E. Slaughter and David Andr¨ and Yaqi Wang and Michael P. Short and Danielle M. Perez and Michael R. Tonks and Javier Ortensi and Ling Zou and Richard C. Martineau",
}

@misc{MooseFramework,
author = {Idaho National Laboratory},
title = {{MOOSE Framework}},
xhowpublished = {Online},
year = {2016},
howpublished = {Online at \textit{http://mooseframework.org/}}
}

@misc{Shamonin02vtkcave,
  author = {Denis P. Shamonin},
  title = {VtkCave},
  xhowpublished = {Online (defunct)},
  year = {2002},
  howpublished = {Online at \textit{http://staff.science.uva.nl/dshamoni/myprojects/VtkCave.html} (defunct)}
}

@misc{notes2002,
  author = {Georges Grinstein and Daniel Keim and Matthew Ward},
  title = {Information Visualization, Visual Data Mining, and Its Application to Drug Design},
  howpublished = {IEEE Visualization 2002 Course \#1 Notes},
  month = {October},
  year = {2002}
}

%% NOTE: I can't get this one to work with the URL!
@misc{Bavoil:2008,
  author = {Bavoil, Louis and Myers, Kevin},
  title = {Order Independent Transparency with Dual Depth Peeling},
  xhowpublished = {Online},
  year = {2008},
  xxhowpublished = {Online at \textit{http://developer.download.nvidia.com/SDK/10/opengl/src/dual_depth_peeling/doc/DualDepthPeeling.pdf}}
}

@book{Wang:2010,
 author = {Wang, Rui and Qian, Xuelei},
 title = {OpenSceneGraph 3.0: Beginner's Guide},
 year = {2010},
 isbn = {1849512825, 9781849512824},
 publisher = {Packt Publishing},
} 

@article{McDowell:2006,
    author = {McDowell, Perry and Darken, Rudolph and Sullivan, Joe and Johnson, Erik},
    journal = {The Journal of Defense Modeling and Simulation: Applications, Methodology, Technology},
    number = {3},
    posted-at = {2010-12-07 16:39:14},
    volume = {2},
    title = {{Delta3D: A Complete Open Source Game and Simulation Engine for Building Military Training Systems Perry McDowell}},
    year = {2006}
}

@inproceedings{Sherman:2010,
  author = {Sherman, William R. and O'Leary, Patrick and Whiting, Eric T. and Grover, Shane and Wernert, Eric A.},
  booktitle = {ISVC (2)},
  editor = {Bebis, George and Boyle, Richard D. and Parvin, Bahram and Koracin, Darko and Chung, Ronald and Hammoud, Riad I. and Hussain, Muhammad and Tan, Kar-Han and Crawfis, Roger and Thalmann, Daniel and Kao, David and Avila, Lisa},
  ee = {http://dx.doi.org/10.1007/978-3-642-17274-8_36},
  isbn = {978-3-642-17273-1},
  pages = {361-372},
  publisher = {Springer},
  series = {Lecture Notes in Computer Science},
  title = {{IQ-Station: A Low Cost Portable Immersive Environment.}},
  volume = 6454,
  year = 2010
}

@inproceedings{Pavlik:2012,
  author = {Pavlik, Ryan A. and Vance, Judy M.},
  booktitle = {SEARIS},
  ee = {http://dx.doi.org/10.1109/SEARIS.2012.6231166},
  isbn = {978-1-4673-1249-3},
  pages = {29-35},
  publisher = {IEEE},
  title = {{VR JuggLua: A framework for VR applications combining Lua, OpenSceneGraph, and VR Juggler.}},
  year = 2012
}

@article{Ohno:2006,
title = {{Virtual reality visualization by CAVE with VFIVE and VTK}},
doi = "10.1017/S0022377806005253",
publisher = "Cambridge University Press",
address = "Cambridge, UK",
author = "N. Ohno and A. Kageyama  and K. Kusano",
volume = "72",
number = "6",
pages = "1069-1072",
year = "2006",
month = "12",
day = "20",
journal = "Journal of Plasma Physics"
}

@article{Bryson:1996,
 author = {Bryson, Steve},
 title = {Virtual Reality in Scientific Visualization},
 journal = {Commun. ACM},
 issue_date = {May 1996},
 volume = {39},
 number = {5},
 month = may,
 year = {1996},
 issn = {0001-0782},
 pages = {62--71},
 numpages = {10},
 url = {http://doi.acm.org/10.1145/229459.229467},
 doi = {10.1145/229459.229467},
 acmid = {229467},
 publisher = {ACM},
 address = {New York, NY, USA},
} 

@inproceedings{Kreylos:2006,
 author = {Kreylos, Oliver and Bawden, Gerald and Bernardin, Tony and Billen, Magali I. and Cowgill, Eric S. and Gold, Ryan D. and Hamann, Bernd and Jadamec, Margarete and Kellogg, Louise H. and Staadt, Oliver G. and Sumner, Dawn Y.},
 title = {Enabling Scientific Workflows in Virtual Reality},
 booktitle = {Proceedings of the 2006 ACM International Conference on Virtual Reality Continuum and Its Applications},
 series = {VRCIA '06},
 year = {2006},
 isbn = {1-59593-324-7},
 location = {Hong Kong, China},
 pages = {155--162},
 numpages = {8},
 url = {http://doi.acm.org/10.1145/1128923.1128948},
 doi = {10.1145/1128923.1128948},
 acmid = {1128948},
 publisher = {ACM},
 address = {New York, NY, USA},
 keywords = {geosciences, scientific visualization, virtual reality, workflow},
}

@article{Billen:2008,
 author = {Billen, Magali I. and Kreylos, Oliver and Hamann, Bernd and Jadamec, Margarete A. and Kellogg, Louise H. and Staadt, Oliver and Sumner, Dawn Y.},
 title = {A Geoscience Perspective on Immersive 3D Gridded Data Visualization},
 journal = {Comput. Geosci.},
 issue_date = {September, 2008},
 volume = {34},
 number = {9},
 month = sep,
 year = {2008},
 issn = {0098-3004},
 pages = {1056--1072},
 numpages = {17},
 url = {http://dx.doi.org/10.1016/j.cageo.2007.11.009},
 doi = {10.1016/j.cageo.2007.11.009},
 acmid = {1383982},
 publisher = {Pergamon Press, Inc.},
 address = {Tarrytown, NY, USA},
}

@inproceedings{Rantzau:1998,
    author = {Rantzau, D. and Frank, K. and Lang, U. and Rainer, D. and Woessner, U.},
    title = {{COVISE} in the {CUBE}: an environment for analyzing large and complex simulation data},
    booktitle = {Proceedings of the 2nd Workshop on Immersive Projection Technology},
    year = {1998}
}

@inproceedings{Schulze:2001,
 author = {Schulze, J\"{u}rgen P. and Niemeier, Roland and Lang, Ulrich},
 title = {The Perspective Shear-warp Algorithm in a Virtual Environment},
 booktitle = {Proceedings of the Conference on Visualization '01},
 series = {VIS '01},
 year = {2001},
 isbn = {0-7803-7200-X},
 location = {San Diego, California},
 pages = {207--214},
 numpages = {8},
 url = {http://dl.acm.org/citation.cfm?id=601671.601703},
 acmid = {601703},
 publisher = {IEEE Computer Society},
 address = {Washington, DC, USA},
 keywords = {perspective shear-warp, virtual environments, volume rendering},
}

@article{Humphreys:2002,
  author = {Humphreys, G. and Houston, M. and Ng, R. and Frank, R. and 
 Ahern, S. and Kirchner, P. D. and and Klosowski, J. T.},
  title = {Chromium: a stream-processing framework for interactive rendering on clusters},
  year = "2002",
  journal = {ACM Transactions on Graphics (TOG)},
  volume = "21",
  number = "3",
  pages = "693--702"
}

@inproceedings{Humphreys:2001,
 author = {Humphreys, Greg and Eldridge, Matthew and Buck, Ian and Stoll, Gordan and Everett, Matthew and Hanrahan, Pat},
 title = {WireGL: a scalable graphics system for clusters},
 booktitle = {Proceedings of the SIGGRAPH Conference},
 year = {2001},
 pages = {129--140},
 volume = {1}
}
 
 @inproceedings{Zielinski:2014,
 author = {Zielinski, David and McMahan, Ryan and Shokur, Solaiman and Morya, Edgard and Kopper, Regis},
 title = {Enabling Closed-Source Applications for Virtual Reality via OpenGL Intercept Techniques},
 booktitle = {SEARIS 2014 Workshop. Co-located with the IEEE VR 2014 conference},
 year = {2014},
 pages = {8}
}
 
@misc{TechViz:2016,
author = {TechViz.},
title = {TechViz},
xhowpublished = {Online},
year = {2016},
howpublished = {Online at \textit{http://www.techviz.net}}
}
 
@misc{Conduit:2016,
author = {Mechdyne},
title = {Conduit},
xhowpublished = {Online},
year = {2016},
howpublished = {Online at \textit{https://www.mechdyne.com/software.aspx?name=Conduit}}
}

@misc{VE-Suite:2016,
author = {Bryden, K. Mark and McCorkle, Doug and Bryden, Aaron},
title = {VE-Suite},
xhowpublished = {Online},
year = {2016},
howpublished = {Online at \textit{http://www.vesuite.org/}}
}

@mastersthesis{Bivins:2005,
  author = "Gerrick O?Ron Bivins",
  title = {A texture-based framework for improving CFD data visualization in a virtual environment},
  school = "Iowa State University",
  year = 2005,
}

@incollection {LaViola:2007,
author={Joseph LaViola and Prabhat and Andrew Forsberg and David H. Laidlaw and Andries {van Dam}},
booktitle=	{Interactive Visualization: A State-of-the-Art Survey},
publisher=	{Springer Verlag},
title=	{Virtual Reality-Based Interactive Scientific Visualization Environments},
year="2008"
}

@book{Schroeder:2004,
  author = "Schroeder, W. and Martin, K. and Lorensen, B.",
  title = {The Visualization Toolkit: An object oriented approach to 3d graphics},
  edition = "4th",
  year = 2004,
  publisher = "Kitware, Inc.",
}

@phdthesis{Belleman:2003,
  author = "R.G. Belleman",
  title = {Interactive Exploration in Virtual Environments},
  school = "University of Amsterdam",
  year = 2003,
}

@inproceedings{Tufo:1999,
 author = {Tufo, H. M. and Fischer, P. F. and Papka, M. E. and Blom, K.},
 title = {Numerical Simulation and Immersive Visualization of Hairpin Vortices},
 booktitle = {Proceedings of the 1999 ACM/IEEE Conference on Supercomputing},
 series = {SC '99},
 year = {1999},
 isbn = {1-58113-091-0},
 location = {Portland, Oregon, USA},
 articleno = {62},
 url = {http://doi.acm.org/10.1145/331532.331594},
 doi = {10.1145/331532.331594},
 acmid = {331594},
 publisher = {ACM},
 address = {New York, NY, USA},
} 

@inproceedings{Blom:2006,
 author = {Blom, K.},
 title = {{vjVTK: a toolkit for interactive visualization in Virtual Reality}},
 booktitle = {Proceedings of Eurographics Symposium on Virtual Environments ( EGVE) '06},
 year = {2006},
 location = {Lisbon, Portugal},
 editor  = {Hubbold, R. and Ling, M.},
} 

@inproceedings{Bierbaum:2001,
 author = {Bierbaum, Allen and Just, Christopher and Hartling, Patrick and Meinert, Kevin and Baker, Albert and Cruz-Neira, Carolina},
 title = {{VR Juggler: A Virtual Platform for Virtual Reality Application Development}},
 booktitle = {Proceedings of the Virtual Reality 2001 Conference (VR'01)},
 series = {VR '01},
 year = {2001},
 isbn = {0-7695-0948-7},
 pages = {89--},
 url = {http://dl.acm.org/citation.cfm?id=580521.835847},
 acmid = {835847},
 publisher = {IEEE Computer Society},
 address = {Washington, DC, USA},
} 

@misc{CAVELib:2016,
author = {Mechdyne},
title = {{CAVELib}},
xhowpublished = {Online},
year = {2016},
howpublished = {Online at \textit{https://www.mechdyne.com/software.aspx?name=CAVELib}}
}

@misc{OpenVR:2016,
author = {Valve},
title = {{OpenVR}},
xhowpublished = {Online},
year = {2016},
howpublished = {Online at \textit{https://github.com/ValveSoftware/openvr}}
}

@misc{Oculus:2016,
author = {facebook},
title = {{Oculus}},
xhowpublished = {Online},
year = {2016},
howpublished = {Online at \textit{https://developer.oculus.com/}}
}

@misc{Road2VR:2015,
author = {{Road to VR}},
title = {{Making Valve's OpenVR Truly Inclusive for VR Headsets}},
xhowpublished = {Online},
year = {2015},
howpublished = {Online at \textit{http://www.roadtovr.com/making-valves-openvr-truly-inclusive-for-vr-headsets}}
}

@article{Hanwell:2015,
title = {{The Visualization Toolkit (VTK): Rewriting the rendering code for modern graphics cards}},
journal = "SoftwareX ",
volume = "1?2",
pages = "9 - 12",
year = "2015",
issn = "2352-7110",
doi = "http://dx.doi.org/10.1016/j.softx.2015.04.001",
url = "http://www.sciencedirect.com/science/article/pii/S2352711015000035",
author = "Marcus D. Hanwell and Kenneth M. Martin and Aashish Chaudhary and Lisa S. Avila",
}

@mastersthesis{Hannema:2001,
  author = "Don Hannema",
  title = {{Interaction in Virtual Reality}},
  school = "University of Amsterdam",
  year = 2001,
}

@article{Brooks:1990,
  author = {Brooks,Jr., Frederick P. and Ouh-Young, Ming and Batter, James J. and Jerome Kilpatrick, P.},
  title = {Project GROPE | Haptic Displays for Scientific Visualization},
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  issue_date = {Aug. 1990},
  volume = {24},
  number = {4},
  month = sep,
  year = {1990},
  issn = {0097-8930},
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  numpages = {9},
  url = {http://doi.acm.org/10.1145/97880.97899},
  doi = {10.1145/97880.97899},
  acmid = {97899},
  publisher = {ACM},
  address = {New York, NY, USA},
} 

@article{Brady:1995,
  author={Brady, Rachael and Pixton, John and Baxter, George and Moran, Patrick and Potter, Clinton S and Carragher, Bridget and Belmont, Andrew},
  title = {Crumbs: a virtual environment tracking tool for biological imaging},
  journal ={\textit{Biomedical Visualization}},
  booktitle={Biomedical Visualization, 1995. Proceedings.},
  volume = {82},
  number = {30},
  isbn = {0-8186-7198-X},
  year = {1995},
  pages = {18--25},
  publisher = {IEEE Computer Society},
  organization={IEEE},
  address = {Los Alamitos, CA, USA}
}

@inproceedings{Gruchalla:2004,
  title={Immersive well-path editing: investigating the added value of immersion},
  author={Gruchalla, Kenny},
  booktitle={Virtual Reality, 2004. Proceedings. IEEE},
  pages={157--164},
  year={2004},
  organization={IEEE}
}

@article{Prabhat:2008,
  author = {Prabhat and Forsberg, Andrew and Katzourin, Michael and Wharton, Kristi and Slater, Mel },
  title = {{``A Comparative Study of Desktop, Fishtank, and Cave Systems for the Exploration of Volume Rendered Confocal Data Sets''}},
  journal ={\textit{IEEE Transactions on Visualization and Computer Graphics}},
  volume = {14},
  number= {3},
  issn = {1077-2626},
  year = {2008},
  pages = {551--563},
  publisher = {IEEE Computer Society},
  address = {Los Alamitos, CA, USA},
  apastyle = {"Prabhat, Forsberg, A., Katzourin, M., Wharton, K., & Slater, M. (2008). \textit{A comparative study of desktop, fishtank, and cave systems for the exploration of volume rendered confocal data sets.} Visualization and Computer Graphics, IEEE Transactions on, 14(3), 551-563."}
}

@article{Moreland:2016,
author = {Kenneth Moreland and Christopher Sewell and William Usher and Li-ta Lo and Jeremy Meredith and David Pugmire and James Kress and Hendrik Schroots and Kwan-Liu Ma and Hank Childs and Matthew Larsen and Chun-Ming Chen and Robert Maynard and Berk Geveci},
title = {VTK-m: Accelerating the Visualization Toolkit for Massively Threaded Architectures},
journal = {IEEE Computer Graphics and Applications},
volume = {36},
number = {3},
issn = {0272-1716},
year = {2016},
pages = {48-58},
doi = {doi.ieeecomputersociety.org/10.1109/MCG.2016.48},
publisher = {IEEE Computer Society},
address = {Los Alamitos, CA, USA},
}

@INPROCEEDINGS{Reda:2013, 
author={K. Reda and A. Knoll and K. i. Nomura and M. E. Papka and A. E. Johnson and J. Leigh}, 
booktitle={2013 IEEE Symposium on Large-Scale Data Analysis and Visualization (LDAV)}, 
title={Visualizing large-scale atomistic simulations in ultra-resolution immersive environments}, 
year={2013}, 
pages={59-65}, 
doi={10.1109/LDAV.2013.6675159}, 
month={Oct}
}

@article{Reda:2013a,
author = {K. Reda and A. Febretti and A. Knoll and J. Aurisano and J. Leigh and A. Johnson and M. E. Papka and M. Hereld},
title = {Visualizing Large, Heterogeneous Data in Hybrid-Reality Environments},
journal = {IEEE Computer Graphics and Applications},
volume = {33},
number = {4},
issn = {0272-1716},
year = {2013},
pages = {38-48},
doi = {doi.ieeecomputersociety.org/10.1109/MCG.2013.37},
publisher = {IEEE Computer Society},
address = {Los Alamitos, CA, USA},
}

@INPROCEEDINGS{Febretti:2014, 
author={A. Febretti and A. Nishimoto and V. Mateevitsi and L. Renambot and A. Johnson and J. Leigh}, 
booktitle={2014 IEEE Virtual Reality (VR)}, 
title={Omegalib: A multi-view application framework for hybrid reality display environments}, 
year={2014}, 
pages={9-14}, 
doi={10.1109/VR.2014.6802043}, 
ISSN={1087-8270}, 
month={March}
}

@ARTICLE{Amatriain:2009, 
author={X. Amatriain and J. Kuchera-Morin and T. Hollerer and S. T. Pope}, 
journal={IEEE MultiMedia}, 
title={The AlloSphere: Immersive Multimedia for Scientific Discovery and Artistic Exploration}, 
year={2009}, 
volume={16}, 
number={2}, 
pages={64-75}, 
doi={10.1109/MMUL.2009.35}, 
ISSN={1070-986X}, 
month={April}
}

@INPROCEEDINGS{Marai:2016, 
author={G. Elisabeta Marai and Angus G. Forbes and Andrew Johnson}, 
booktitle={IEEE VR Workshop on Immersive Analytics at 2016 IEEE Virtual Reality (VR)}, 
title={Interdisciplinary Immersive Analytics at the Electronic Visualization Laboratory: Lessons Learned and Upcoming Challenges}, 
year={2016}, 
month={March}
}

@INPROCEEDINGS{O'Leary:2008, 
author={P. O'Leary and W. Sherman and A. Murray and C. Riesenfeld and V. Peng}, 
booktitle={Workshop on Scientific Workflow with Immersive Interfaces for Visualization at EEE Visualization 2008 Conference}, 
title={Enabling Scientific Workflows Using Immersive Microbiology}, 
year={2008}, 
pages={DVD},
month={October},
publisher = {IEEE Press},
address = {Columbus, OH, USA}
}

@misc{TBB:2016,
author = {Intel},
title = {{TBB}},
xhowpublished = {Online},
year = {2016},
howpublished = {Online at \textit{https://www.threadingbuildingblocks.org/}}
}

@misc{OpenMP:2016,
author = {OpenMP.org},
title = {{OpenMP}},
xhowpublished = {Online},
year = {2016},
howpublished = {Online at \textit{http://www.openmp.org/}}
}

@inproceedings{Gautier:2013,
 author = {Gautier, Thierry and Lima, Joao V. F. and Maillard, Nicolas and Raffin, Bruno},
 title = {XKaapi: A Runtime System for Data-Flow Task Programming on Heterogeneous Architectures},
 booktitle = {Proceedings of the 2013 IEEE 27th International Symposium on Parallel and Distributed Processing},
 series = {IPDPS '13},
 year = {2013},
 isbn = {978-0-7695-4971-2},
 pages = {1299--1308},
 numpages = {10},
 url = {http://dx.doi.org/10.1109/IPDPS.2013.66},
 doi = {10.1109/IPDPS.2013.66},
 acmid = {2511383},
 publisher = {IEEE Computer Society},
 address = {Washington, DC, USA}
}