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Implement a Spark transformer to compute variant sample stats #20

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jtarraga opened this issue Sep 12, 2019 · 0 comments
Open

Implement a Spark transformer to compute variant sample stats #20

jtarraga opened this issue Sep 12, 2019 · 0 comments
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enhancement New feature or request

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In order to compute variant sample statistics from a Spark dataset, Oskar should provide a transformer with a UDAF function: VariantSampleStatsTransformer. This transformer should be used when implementing variant sample stats analysis.
@jtarraga jtarraga added the enhancement New feature or request label Sep 12, 2019
@jtarraga jtarraga self-assigned this Sep 12, 2019
jtarraga added a commit that referenced this issue Sep 24, 2019
@jtarraga
analysis: implement the variant sample stats tranformer, #20
b831876
jtarraga added a commit that referenced this issue Sep 25, 2019
@jtarraga
analysis: implement variant stats analysis and spark/parquet analysis…
6c671ea 
… executor, #20
jtarraga added a commit that referenced this issue Sep 27, 2019
@jtarraga
analysis: improve variant sample stats transformer, #20
a66d4b0
jtarraga added a commit that referenced this issue Oct 3, 2019
@jtarraga
analysis: improve variant sample stats analysis by supporting as inpu…
194bc39 
…t: a family ID or an individual ID), #20
jtarraga added a commit that referenced this issue Oct 4, 2019
@jtarraga
analysis: update sample variant stats analysis according to the new s…
015a57b 
…ample variant stats model (biodata), #20
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