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Create some notebooks as tutorials #2

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4 tasks
imedina opened this issue Nov 23, 2018 · 0 comments
Open
4 tasks

Create some notebooks as tutorials #2

imedina opened this issue Nov 23, 2018 · 0 comments
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@roldanx
Labels
notebook Issues related with notebooks
Milestone
v1.0.0

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@imedina
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imedina commented Nov 23, 2018

It would be great to implement and provide some notebooks, these will be useful as tutorials and documentation.

Few notebooks can be implemented to show different aspects of pyOskar:

  • variant filter capabilities, filtering variants by many different parameters and mode of inheritance
  • variant facets or aggregation stats
  • variant stats
  • GWAS analysis, HWE, ...
@imedina imedina added the notebook Issues related with notebooks label Nov 23, 2018
@imedina imedina added this to the v1.0.0 milestone Nov 23, 2018
@roldanx roldanx self-assigned this Nov 23, 2018
roldanx referenced this issue in roldanx/oskar Nov 29, 2018
@roldanx
spark: change notebooks style #2
bfdc97a
imedina pushed a commit that referenced this issue Dec 10, 2018
@roldanx
Merge pull request #2 from roldanx/issue-1
beb9b47
imedina pushed a commit that referenced this issue Dec 10, 2018
@roldanx
spark: create facets and modify stats name #2
0053321
imedina pushed a commit that referenced this issue Dec 10, 2018
@roldanx
spark: edit final facet and scores text #2
43fbac6
imedina pushed a commit that referenced this issue Dec 10, 2018
@roldanx
spark: edit small details in stats notebook #2
818a593
imedina pushed a commit that referenced this issue Dec 10, 2018
@roldanx
spark: add functionality to notebooks #2
fc515ad
imedina pushed a commit that referenced this issue Dec 10, 2018
@roldanx
spark: add plotly charts to facets and stats #2
71e107b 
add piechart, dendogram and heatmap. Slso deletes pandas histogram.
imedina pushed a commit that referenced this issue Dec 10, 2018
@roldanx
spark: change file names and add stats facet to facet notebook #2
ca5bf25
imedina pushed a commit that referenced this issue Dec 10, 2018
@roldanx
spark: convert dendogram and heatmap distancess into absolute values #2
76d9a6a
imedina pushed a commit that referenced this issue Dec 10, 2018
@roldanx
spark: change title style #2
5d1a6f1
j-coll pushed a commit that referenced this issue Dec 14, 2018
@roldanx
spark: delete useless code #2
097a211
j-coll pushed a commit that referenced this issue Dec 14, 2018
@roldanx
spark: add stylish formats and variant_functionality extra explanations
4491292 
#2
j-coll pushed a commit that referenced this issue Dec 14, 2018
@roldanx
spark: add new functionality to notebooks and starts IBS dendogram #2
9804e51
j-coll pushed a commit that referenced this issue Dec 14, 2018
@roldanx
spark: finish IBS dendogram #2
2570f7d
j-coll pushed a commit that referenced this issue Dec 14, 2018
@roldanx
spark: add usage to methods #2
5fbd415
imedina pushed a commit that referenced this issue Jan 18, 2019
@roldanx
spark: change style and correct small details for all notebooks #2
590ef5b
imedina pushed a commit that referenced this issue Jan 18, 2019
@roldanx
spark: change notebooks style #2
1c53fa0
imedina pushed a commit that referenced this issue Feb 1, 2019
@roldanx
notebooks: edit markdown from notebooks #2
33a3a3d
imedina pushed a commit that referenced this issue Feb 1, 2019
@roldanx
notebooks: add new functionality to all notebooks #2
756d979
imedina pushed a commit that referenced this issue Feb 1, 2019
@roldanx
Merge pull request #4 from roldanx/issue-2
45e7e11 
notebooks: add new functionality to all notebooks #2
imedina pushed a commit that referenced this issue Feb 1, 2019
@roldanx
notebooks: add new features to all notebooks #2
0ed5b41
imedina pushed a commit that referenced this issue Feb 1, 2019
@roldanx
notebooks:add style changes #2
724bb37
imedina pushed a commit that referenced this issue Feb 1, 2019
@roldanx
notebooks: add note to notebooks #2
4a016c6
imedina pushed a commit that referenced this issue Feb 1, 2019
@roldanx
notebooks: add style changes #2
2d70d44
imedina pushed a commit that referenced this issue Feb 1, 2019
@roldanx
notebooks: add style changes #2
8e353d1
imedina pushed a commit that referenced this issue Feb 1, 2019
@roldanx
notebooks: add big changes to notebooks and delete GWAS #2
eb6e8d1
imedina pushed a commit that referenced this issue Feb 1, 2019
@roldanx
notebooks: add notebook style changes #2
f3de729
imedina pushed a commit that referenced this issue Feb 1, 2019
@roldanx
notebooks: add style changes #2
b2a9a36
imedina pushed a commit that referenced this issue Feb 1, 2019
@roldanx
notebooks: update variant_filtering #2
088b5e7
imedina pushed a commit that referenced this issue Feb 1, 2019
@roldanx
notebook: add analysis notebook #2
0345b39
imedina pushed a commit that referenced this issue Feb 1, 2019
@roldanx
notebook: add PCA new functionality #2
35473df
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notebook Issues related with notebooks
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