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Support NA -> AA translation #33

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bovee opened this issue Sep 10, 2019 · 2 comments
Open

Support NA -> AA translation #33

bovee opened this issue Sep 10, 2019 · 2 comments

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@bovee
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bovee commented Sep 10, 2019

This is a fairly basic bioinformatics function that we should probably add. Questions are:

  • Which translation tables should we add and how should they be selected?
  • Where should this funcationality be located? We probably need to clean up the Sequence processing API a little anyhow.
@luizirber
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@bovee
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bovee commented Sep 12, 2019

Thanks @luizirber! I think those will be handy references.

I think the big two questions for me are how many translation tables do we want to support out of NCBI's list (https://www.ncbi.nlm.nih.gov/Taxonomy/Utils/wprintgc.cgi) and do we want to support all the IUPAC codes too (maybe yes? this is kind of a pain though).

@bovee bovee closed this as completed Sep 12, 2019
@bovee bovee reopened this Sep 12, 2019
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