On PR to submodule parent package was forked instead of submodule

[3y3]

• Extension version: v0.100.1
• VSCode Version: 1.9.3
• OS: MacOS
• Repository Clone Configuration (single repository/fork of an upstream repository): single repository with submodules
• Github Product (Github.com/Github Enterprise version x.x.x): Github.com

Steps to Reproduce:

tl;dr: On PR create for submodule, extension will fork main repository instead of submodule.
Looks like it's the same as
#4487
#5181

We found issue on diplodoc metapackage. But it is reproducible on any repo with submodules.

Prerequisites:
Metapackage - organisation owned repo with submodules and enabled codespaces.
Submodule - any organisation owned repo linked to metapackage.
Alice - user out of organization scope.

1. Create codespace for metapackage and open it in browser VSCode
2. Pull submodules. We use this small script to pull all submodules in one time, but looks like there is nothing special.
3. Make some change to submodule.
4. Create new branch in submodule. Commit changes (with help of Github Pull Request Extension)
5. Push the button "Create Pull Request"
6. Check autofilled fields (looks like at this step all is normal: BASE and MERGE fields refers to submodule branches)
7. Push "Create" button.
8. VSCode notifies Alice about restriction to pull directly to organization and proposes to create fork.
9. Submit to fork submodule
   9.1 Current behaviour: fork for metapackage was created, pr flow was broken on next step with reasonable error.
   
   9.2 Expected behaviour: fork for submodule was created, pr flow finished succesefully.
10. At second try to push "Create" button error message was changed to
    

[chrmarti]

Tried with https://github.com/chrmarti/test-main-repo and https://github.com/chrmarti/test-sub-repo. It forked the submodule as https://github.com/notquiteme/test-sub-repo and updated the git remotes to origin and upstream, but then failed.

PR output channel:

2025-01-30 15:45:53.119 [error] GitHubRepository+1.1> Error querying GraphQL API: GraphQL error: Could not resolve to a Repository with the name 'chrmarti/.github'.. 
2025-01-30 15:45:53.119 [error] GitHubRepository+1.1> Error querying GraphQL API: GraphQL error: Could not resolve to a Repository with the name 'chrmarti/.github'.. 
2025-01-30 15:45:53.119 [error] GitHubRepository+1.1> Fetching pull request templates failed: Error: GraphQL error: Could not resolve to a Repository with the name 'chrmarti/.github'.
2025-01-30 15:45:53.119 [error] GitHubRepository+1.1> Fetching pull request templates failed: Error: GraphQL error: Could not resolve to a Repository with the name 'chrmarti/.github'.
2025-01-30 15:45:53.272 [info] CreatePullRequestViewProvider> Initializing "create" view: {"canModifyBranches":true,"defaultBaseRemote":{"owner":"chrmarti","repositoryName":"test-sub-repo"},"defaultBaseBranch":"main","defaultCompareRemote":{"owner":"chrmarti","repositoryName":"test-sub-repo"},"defaultCompareBranch":"raspy-whitefish","defaultTitle":"change","defaultDescription":"","baseHasMergeQueue":false,"remoteCount":2,"allowAutoMerge":false,"mergeMethodsAvailability":{"merge":false,"squash":false,"rebase":false},"autoMergeDefault":false,"createError":"","labels":[],"isDraftDefault":false,"isDarkTheme":true,"creating":false,"initializeWithGeneratedTitleAndDescription":false,"preReviewState":0,"reviewing":false}
2025-01-30 15:45:57.086 [error] GitHubRepository+1.1> Error querying GraphQL API: GraphQL error: Could not resolve to a Repository with the name 'chrmarti/.github'.. 
2025-01-30 15:45:57.086 [error] GitHubRepository+1.1> Fetching pull request templates failed: Error: GraphQL error: Could not resolve to a Repository with the name 'chrmarti/.github'.
2025-01-30 15:46:39.879 [info] CreatePullRequestViewProvider> Found push remote origin for chrmarti/test-sub-repo and branch raspy-whitefish
2025-01-30 15:47:01.383 [info] Review+1> Validate state in progress
2025-01-30 15:47:01.383 [info] Review+1> Validating state...
2025-01-30 15:47:01.405 [info] Found GitHub remote for folder /Users/chrmarti/Development/repos/test-main-repo/test-sub-repo
2025-01-30 15:47:01.437 [info] Review+1> Queuing additional validate state
2025-01-30 15:47:01.869 [error] GitHubRepository+1.1> Error querying GraphQL API: GraphQL error: Could not resolve to a Repository with the name 'chrmarti/.github'.. 
2025-01-30 15:47:01.869 [error] GitHubRepository+1.1> Error querying GraphQL API: GraphQL error: Could not resolve to a Repository with the name 'chrmarti/.github'.. 
2025-01-30 15:47:01.869 [error] GitHubRepository+1.1> Fetching pull request templates failed: Error: GraphQL error: Could not resolve to a Repository with the name 'chrmarti/.github'.
2025-01-30 15:47:01.869 [error] GitHubRepository+1.1> Fetching pull request templates failed: Error: GraphQL error: Could not resolve to a Repository with the name 'chrmarti/.github'.
2025-01-30 15:47:01.871 [info] FolderRepositoryManager+1> Trying to use globalState for assignableUsers.
2025-01-30 15:47:01.891 [info] FolderRepositoryManager+1> Using globalState assignableUsers for 1.
2025-01-30 15:47:01.900 [info] Review+1> No matching pull request metadata found locally for current branch raspy-whitefish
2025-01-30 15:47:01.927 [info] Review+1> No matching pull request metadata found on GitHub for current branch raspy-whitefish
2025-01-30 15:47:01.931 [info] Review+1> Validating state...
2025-01-30 15:47:01.932 [info] Found GitHub remote for folder /Users/chrmarti/Development/repos/test-main-repo/test-sub-repo
2025-01-30 15:47:02.364 [info] FolderRepositoryManager+1> Trying to use globalState for assignableUsers.
2025-01-30 15:47:02.369 [info] FolderRepositoryManager+1> No globalState for assignableUsers.
2025-01-30 15:47:02.386 [info] Review+1> No matching pull request metadata found locally for current branch raspy-whitefish
2025-01-30 15:47:02.410 [info] Review+1> No matching pull request metadata found on GitHub for current branch raspy-whitefish
2025-01-30 15:47:02.552 [error] GitHubRepository+1.2> Error querying GraphQL API: GraphQL error: Could not resolve to a Repository with the name 'chrmarti/.github'.. 
2025-01-30 15:47:02.552 [error] GitHubRepository+1.2> Fetching pull request templates failed: Error: GraphQL error: Could not resolve to a Repository with the name 'chrmarti/.github'.

Git output channel:

2025-01-30 15:45:58.312 [info] > git for-each-ref --sort -committerdate --format %(refname) %(objectname) %(*objectname) [15ms]
2025-01-30 15:45:58.317 [info] > git status -z -uall [21ms]
2025-01-30 15:46:34.708 [info] > git for-each-ref --format=%(refname)%00%(upstream:short)%00%(objectname)%00%(upstream:track)%00%(upstream:remotename)%00%(upstream:remoteref) --ignore-case refs/heads/raspy-whitefish refs/remotes/raspy-whitefish [33ms]
2025-01-30 15:47:01.347 [info] > git remote rename origin upstream [39ms]
2025-01-30 15:47:01.363 [info] > git config --get commit.template [15ms]
2025-01-30 15:47:01.365 [info] > git for-each-ref --format=%(refname)%00%(upstream:short)%00%(objectname)%00%(upstream:track)%00%(upstream:remotename)%00%(upstream:remoteref) --ignore-case refs/heads/raspy-whitefish refs/remotes/raspy-whitefish [15ms]
2025-01-30 15:47:01.380 [info] > git status -z -uall [14ms]
2025-01-30 15:47:01.380 [info] > git for-each-ref --sort -committerdate --format %(refname) %(objectname) %(*objectname) [13ms]
2025-01-30 15:47:01.396 [info] > git for-each-ref --format=%(refname)%00%(upstream:short)%00%(objectname)%00%(upstream:track)%00%(upstream:remotename)%00%(upstream:remoteref) --ignore-case refs/heads/raspy-whitefish refs/remotes/raspy-whitefish [13ms]
2025-01-30 15:47:01.397 [info] > git for-each-ref --format=%(refname)%00%(upstream:short)%00%(objectname)%00%(upstream:track)%00%(upstream:remotename)%00%(upstream:remoteref) --ignore-case refs/heads/raspy-whitefish refs/remotes/raspy-whitefish [15ms]
2025-01-30 15:47:01.398 [info] > git diff --name-status -z --diff-filter=ADMR upstream/main...raspy-whitefish [13ms]
2025-01-30 15:47:01.398 [info] > git remote add origin https://github.com/notquiteme/test-sub-repo.git [14ms]
2025-01-30 15:47:01.411 [info] > git for-each-ref --format=%(refname)%00%(upstream:short)%00%(objectname)%00%(upstream:track)%00%(upstream:remotename)%00%(upstream:remoteref) --ignore-case refs/heads/raspy-whitefish refs/remotes/raspy-whitefish [14ms]
2025-01-30 15:47:01.421 [info] > git config --get commit.template [22ms]
2025-01-30 15:47:01.421 [info] > git log --format=%H%n%aN%n%aE%n%at%n%ct%n%P%n%D%n%B -z upstream/main..raspy-whitefish [18ms]
2025-01-30 15:47:01.421 [info] > git for-each-ref --format=%(refname)%00%(upstream:short)%00%(objectname)%00%(upstream:track)%00%(upstream:remotename)%00%(upstream:remoteref) --ignore-case refs/heads/raspy-whitefish refs/remotes/raspy-whitefish [21ms]
2025-01-30 15:47:01.425 [info] > git for-each-ref --format=%(refname)%00%(upstream:short)%00%(objectname)%00%(upstream:track)%00%(upstream:remotename)%00%(upstream:remoteref) --ignore-case refs/heads/raspy-whitefish refs/remotes/raspy-whitefish [13ms]
2025-01-30 15:47:01.434 [info] > git status -z -uall [12ms]
2025-01-30 15:47:01.435 [info] > git for-each-ref --sort -committerdate --format %(refname) %(objectname) %(*objectname) [12ms]
2025-01-30 15:47:01.439 [info] > git show -s --decorate=full --shortstat --format=%H%n%aN%n%aE%n%at%n%ct%n%P%n%D%n%B -z df18c7c87ee666df9a06f8661e42b337abb4c85c [13ms]
2025-01-30 15:47:01.463 [info] > git for-each-ref --format=%(refname)%00%(upstream:short)%00%(objectname)%00%(upstream:track)%00%(upstream:remotename)%00%(upstream:remoteref) --ignore-case refs/heads/raspy-whitefish refs/remotes/raspy-whitefish [26ms]
2025-01-30 15:47:01.464 [info] > git for-each-ref --format=%(refname)%00%(upstream:short)%00%(objectname)%00%(upstream:track)%00%(upstream:remotename)%00%(upstream:remoteref) --ignore-case refs/heads/raspy-whitefish refs/remotes/raspy-whitefish [28ms]
2025-01-30 15:47:01.480 [info] > git for-each-ref --format=%(refname)%00%(upstream:short)%00%(objectname)%00%(upstream:track)%00%(upstream:remotename)%00%(upstream:remoteref) --ignore-case refs/heads/raspy-whitefish refs/remotes/raspy-whitefish [16ms]
2025-01-30 15:47:01.500 [info] > git for-each-ref --format=%(refname)%00%(upstream:short)%00%(objectname)%00%(upstream:track)%00%(upstream:remotename)%00%(upstream:remoteref) --ignore-case refs/heads/raspy-whitefish refs/remotes/raspy-whitefish [15ms]
2025-01-30 15:47:01.513 [info] > git show -s --decorate=full --shortstat --format=%H%n%aN%n%aE%n%at%n%ct%n%P%n%D%n%B -z df18c7c87ee666df9a06f8661e42b337abb4c85c [12ms]
2025-01-30 15:47:01.654 [info] > git diff --name-status -z --diff-filter=ADMR upstream/main...raspy-whitefish [14ms]
2025-01-30 15:47:01.655 [info] > git log --format=%H%n%aN%n%aE%n%at%n%ct%n%P%n%D%n%B -z upstream/main..raspy-whitefish [14ms]
2025-01-30 15:47:01.899 [info] > git config --get --local branch.raspy-whitefish.github-pr-owner-number [26ms]
2025-01-30 15:47:01.899 [warning] [Git][config] git config failed: Failed to execute git
2025-01-30 15:47:01.914 [info] > git config --get --local branch.raspy-whitefish.remote [14ms]
2025-01-30 15:47:01.914 [warning] [Git][config] git config failed: Failed to execute git
2025-01-30 15:47:01.927 [info] > git config --get --local branch.raspy-whitefish.merge [12ms]
2025-01-30 15:47:01.927 [warning] [Git][config] git config failed: Failed to execute git
2025-01-30 15:47:02.091 [info] > git push -u origin raspy-whitefish [652ms]
2025-01-30 15:47:02.092 [info] remote: Repository not found.
fatal: repository 'https://github.com/notquiteme/test-sub-repo.git/' not found
2025-01-30 15:47:02.116 [info] > git config --get commit.template [22ms]
2025-01-30 15:47:02.117 [info] > git for-each-ref --format=%(refname)%00%(upstream:short)%00%(objectname)%00%(upstream:track)%00%(upstream:remotename)%00%(upstream:remoteref) --ignore-case refs/heads/raspy-whitefish refs/remotes/raspy-whitefish [22ms]
2025-01-30 15:47:02.131 [info] > git status -z -uall [13ms]
2025-01-30 15:47:02.132 [info] > git for-each-ref --sort -committerdate --format %(refname) %(objectname) %(*objectname) [13ms]
2025-01-30 15:47:02.150 [info] > git for-each-ref --format=%(refname)%00%(upstream:short)%00%(objectname)%00%(upstream:track)%00%(upstream:remotename)%00%(upstream:remoteref) --ignore-case refs/heads/raspy-whitefish refs/remotes/raspy-whitefish [15ms]
2025-01-30 15:47:02.151 [info] > git for-each-ref --format=%(refname)%00%(upstream:short)%00%(objectname)%00%(upstream:track)%00%(upstream:remotename)%00%(upstream:remoteref) --ignore-case refs/heads/raspy-whitefish refs/remotes/raspy-whitefish [18ms]
2025-01-30 15:47:02.152 [info] > git diff --name-status -z --diff-filter=ADMR upstream/main...raspy-whitefish [16ms]
2025-01-30 15:47:02.152 [info] > git log --format=%H%n%aN%n%aE%n%at%n%ct%n%P%n%D%n%B -z upstream/main..raspy-whitefish [15ms]
2025-01-30 15:47:02.164 [info] > git for-each-ref --format=%(refname)%00%(upstream:short)%00%(objectname)%00%(upstream:track)%00%(upstream:remotename)%00%(upstream:remoteref) --ignore-case refs/heads/raspy-whitefish refs/remotes/raspy-whitefish [13ms]
2025-01-30 15:47:02.179 [info] > git for-each-ref --format=%(refname)%00%(upstream:short)%00%(objectname)%00%(upstream:track)%00%(upstream:remotename)%00%(upstream:remoteref) --ignore-case refs/heads/raspy-whitefish refs/remotes/raspy-whitefish [13ms]
2025-01-30 15:47:02.191 [info] > git show -s --decorate=full --shortstat --format=%H%n%aN%n%aE%n%at%n%ct%n%P%n%D%n%B -z df18c7c87ee666df9a06f8661e42b337abb4c85c [11ms]
2025-01-30 15:47:02.385 [info] > git config --get --local branch.raspy-whitefish.github-pr-owner-number [19ms]
2025-01-30 15:47:02.385 [warning] [Git][config] git config failed: Failed to execute git
2025-01-30 15:47:02.398 [info] > git config --get --local branch.raspy-whitefish.remote [12ms]
2025-01-30 15:47:02.398 [warning] [Git][config] git config failed: Failed to execute git
2025-01-30 15:47:02.410 [info] > git config --get --local branch.raspy-whitefish.merge [11ms]
2025-01-30 15:47:02.410 [warning] [Git][config] git config failed: Failed to execute git
2025-01-30 15:47:02.552 [info] > git ls-files --stage -- /Users/chrmarti/Development/repos/test-main-repo/test-sub-repo/README.md [15ms]
2025-01-30 15:47:02.566 [info] > git cat-file -s f68dbbb077370b788f0c6733f18d54abd75069a5 [13ms]
2025-01-30 15:47:02.579 [info] > git show --textconv :README.md [12ms]

❯ git remote -v
origin  https://github.com/notquiteme/test-sub-repo.git (fetch)
origin  https://github.com/notquiteme/test-sub-repo.git (push)
upstream        https://github.com/chrmarti/test-sub-repo.git (fetch)
upstream        https://github.com/chrmarti/test-sub-repo.git (push)