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[Testing] Dockerized test suite (aces#2430)
* Removing spaces from test suite names Having spaces in test suite names makes it difficult to call phpunit from wrapper scripts, which are needed for the docker-based test suite. * Skipping broken tests * Replacing .click with .submit .click was not executing form submit and was causing the test to fail * Add missing xsi:nil property to fixture * Allow a selenium host/port to be specified via config file * Add docker-based test suite and required scripts * Add note about creating Docker group * Rename Dockerfiles * Use linting scripts in .travis.yml
1 parent c71ca5c commit 706268f

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.travis.yml

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@@ -29,13 +29,8 @@ install:
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- composer install
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- phpenv rehash
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# Install jslint
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- npm install -g jslint
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# Install ESLint and plugins
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- npm -g install [email protected]
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- npm -g install [email protected]
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- npm -g install eslint-plugin-react
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# Install node modules specified in package.json
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- npm install
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# Download a Selenium Web Driver release
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- wget "http://selenium-release.storage.googleapis.com/2.52/selenium-server-standalone-2.52.0.jar"
@@ -79,54 +74,8 @@ before_script:
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# - "LORIS_DB_CONFIG=test/config.xml"
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script:
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# Run PHP -l on everything to ensure there's no syntax
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# errors.
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- for i in `ls php/libraries/*.class.inc modules/*/php/* modules/*/ajax/* htdocs/*.php htdocs/*/*.php`;
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do
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php -l $i || exit $?;
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done
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# Run PHPCS on the entire libraries directory.
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- vendor/bin/phpcs --standard=docs/LorisCS.xml php/libraries php/exceptions php/installer
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- vendor/bin/phpcs --standard=docs/LorisCS.xml --extensions=php/php htdocs
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# Run PHPCS on some scripts
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- vendor/bin/phpcs --standard=docs/LorisCS.xml tools/CouchDB_Import_MRI.php
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- vendor/bin/phpcs --standard=docs/LorisCS.xml tools/assign_missing_instruments.php
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- vendor/bin/phpcs --standard=docs/LorisCS.xml tools/data_dictionary_builder.php
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- vendor/bin/phpcs --standard=docs/LorisCS.xml tools/generic_includes.php
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# Run PHPCS on specific modules
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- vendor/bin/phpcs --standard=docs/LorisCS.xml modules/imaging_uploader/php/NDB_Menu_Filter_imaging_uploader.class.inc
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- vendor/bin/phpcs --standard=docs/LorisCS.xml modules/imaging_uploader/php/File_Decompress.class.inc
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- vendor/bin/phpcs --standard=docs/LorisCS.xml --extensions=php/php,inc/php modules/genomic_browser
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- vendor/bin/phpcs --standard=docs/LorisCS.xml --extensions=php/php,inc/php modules/candidate_list
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- vendor/bin/phpcs --standard=docs/LorisCS.xml --extensions=php/php,inc/php modules/conflict_resolver
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- vendor/bin/phpcs --standard=docs/LorisCS.xml --extensions=php/php,inc/php modules/dashboard
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- vendor/bin/phpcs --standard=docs/LorisCS.xml --extensions=php/php,inc/php modules/examiner
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- vendor/bin/phpcs --standard=docs/LorisCS.xml --extensions=php/php,inc/php modules/training
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- vendor/bin/phpcs --standard=docs/LorisCS.xml --extensions=php/php,inc/php modules/brainbrowser
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- vendor/bin/phpcs --standard=docs/LorisCS.xml --extensions=php/php,inc/php modules/configuration
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- vendor/bin/phpcs --standard=docs/LorisCS.xml --extensions=php/php,inc/php modules/acknowledgements
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- vendor/bin/phpcs --standard=docs/LorisCS.xml --extensions=php/php,inc/php modules/data_release
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- vendor/bin/phpcs --standard=docs/LorisCS.xml --extensions=php/php,inc/php modules/media
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- vendor/bin/phpcs --standard=docs/LorisCS.xml --extensions=php/php,inc/php modules/candidate_parameters/ajax
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- vendor/bin/phpcs --standard=docs/LorisCS.xml --extensions=php/php,inc/php modules/dicom_archive
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- vendor/bin/phpcs --standard=docs/LorisCS.xml --extensions=php/php,inc/php modules/create_timepoint
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- vendor/bin/phpcs --standard=docs/LorisCS.xml --extensions=php/php,inc/php modules/issue_tracker
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# Run JSLINT on specific scripts
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- jslint htdocs/js/jquery.dynamictable.js
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# Run ESLint on Loris modules
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- eslint modules/
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# Run ESLint on generic React components
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- eslint jsx/
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# Run ESLint on specific scripts
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- eslint htdocs/js/util/
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- eslint Gruntfile.js
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- npm run lint:php
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- npm run lint:javascript
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# Run unit tests to make sure functions still do what they should.
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- vendor/bin/phpunit --configuration test/phpunit.xml --coverage-clover=coverage.xml

Dockerfile.test.db

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FROM mysql:5.7
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ARG BASE_DIR
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COPY SQL/0000-00-00-schema.sql /0000-00-00-schema.sql
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COPY SQL/0000-00-01-Permission.sql /0000-00-01-Permission.sql
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COPY SQL/0000-00-02-Menus.sql /0000-00-02-Menus.sql
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COPY SQL/0000-00-03-ConfigTables.sql /0000-00-03-ConfigTables.sql
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COPY SQL/0000-00-04-Help.sql /0000-00-04-Help.sql
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COPY SQL/0000-00-99-indexes.sql /0000-00-99-indexes.sql
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COPY test/sql/CreateTestUser.sql /0000-01-00-TestUser.sql
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COPY docs/instruments/radiology_review.sql /radiology_review.sql
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RUN echo "Use LorisTest;" | cat - \
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0000-00-00-schema.sql \
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0000-00-01-Permission.sql \
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0000-00-02-Menus.sql \
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0000-00-03-ConfigTables.sql \
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0000-00-04-Help.sql \
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0000-00-99-indexes.sql \
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0000-01-00-TestUser.sql \
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radiology_review.sql > /docker-entrypoint-initdb.d/0000-compiled.sql
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RUN echo "Use LorisTest;" >> /docker-entrypoint-initdb.d/0001-paths.sql
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RUN echo "UPDATE Config SET Value='${BASE_DIR}/' WHERE ConfigID=(SELECT ID FROM ConfigSettings WHERE Name='base');" >> /docker-entrypoint-initdb.d/0001-paths.sql
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RUN echo "UPDATE Config SET Value='http://web:8000' WHERE ConfigID=(SELECT ID FROM ConfigSettings WHERE Name='url');" >> /docker-entrypoint-initdb.d/0001-paths.sql

Dockerfile.test.php7

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FROM php:7.0
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RUN apt-get update && \
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apt-get install -y mysql-client zlib1g-dev
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# Install extensions through the scripts the container provides
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RUN docker-php-ext-install pdo_mysql zip

Dockerfile.test.php7.debug

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FROM php:7.0
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RUN apt-get update && \
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apt-get install -y mysql-client zlib1g-dev
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RUN yes | pecl install xdebug-2.4.1
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RUN echo "zend_extension=$(find /usr/local/lib/php/extensions/ -name xdebug.so)" > /usr/local/etc/php/conf.d/xdebug.ini
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RUN echo "xdebug.remote_enable=on" >> /usr/local/etc/php/conf.d/xdebug.ini
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RUN echo "xdebug.remote_autostart=on" >> /usr/local/etc/php/conf.d/xdebug.ini
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# Install extensions through the scripts the container provides
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RUN docker-php-ext-install pdo_mysql zip

docker-compose.yml

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version: '2'
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services:
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db:
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build:
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context: .
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dockerfile: Dockerfile.test.db
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args:
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BASE_DIR: /app/
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environment:
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- MYSQL_DATABASE=LorisTest
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- MYSQL_RANDOM_ROOT_PASSWORD=yes
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selenium:
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image: selenium/standalone-firefox-debug:2.53.1
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ports:
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- "5900:5900"
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web:
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build:
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context: .
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dockerfile: Dockerfile.test.php7
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volumes:
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- ./:/app
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environment:
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- LORIS_DB_CONFIG=/app/test/config.xml
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depends_on:
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- db
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command: php -S 0.0.0.0:8000 -t /app/htdocs /app/htdocs/router.php
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unit-tests:
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build:
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context: .
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dockerfile: Dockerfile.test.php7
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volumes:
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- ./:/app
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working_dir: /app
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environment:
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- LORIS_DB_CONFIG=test/config.xml
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depends_on:
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- db
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entrypoint: /app/test/wait-for-services.sh
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integration-tests:
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build:
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context: .
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dockerfile: Dockerfile.test.php7
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volumes:
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- ./:/app
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working_dir: /app
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environment:
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- LORIS_DB_CONFIG=test/config.xml
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- SELENIUM_REQUIRED=true
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depends_on:
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- db
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- selenium
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- web
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entrypoint: /app/test/wait-for-services.sh
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selenium-debug:
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image: selenium/standalone-firefox-debug:2.53.1
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links:
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- web-debug:web
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ports:
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- "5901:5900"
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web-debug:
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build:
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context: .
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dockerfile: Dockerfile.test.php7.debug
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volumes:
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- ./:/app
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environment:
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- LORIS_DB_CONFIG=/app/test/config.xml
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- XDEBUG_CONFIG=remote_host=${XDEBUG_REMOTE_HOST}
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- PHP_IDE_CONFIG=serverName=LorisTests
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depends_on:
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- db
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command: php -S 0.0.0.0:8000 -t /app/htdocs /app/htdocs/router.php
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unit-tests-debug:
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build:
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context: .
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dockerfile: Dockerfile.test.php7.debug
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volumes:
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- ./:/app
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working_dir: /app
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environment:
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- LORIS_DB_CONFIG=test/config.xml
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- XDEBUG_CONFIG=remote_host=${XDEBUG_REMOTE_HOST}
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- PHP_IDE_CONFIG=serverName=LorisTests
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depends_on:
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- db
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entrypoint: /app/test/wait-for-services.sh
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integration-tests-debug:
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build:
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context: .
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dockerfile: Dockerfile.test.php7.debug
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volumes:
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- ./:/app
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working_dir: /app
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environment:
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- LORIS_DB_CONFIG=test/config.xml
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- SELENIUM_REQUIRED=true
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- XDEBUG_CONFIG=remote_host=${XDEBUG_REMOTE_HOST}
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- PHP_IDE_CONFIG=serverName=LorisTests
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links:
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- db
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- selenium-debug:selenium
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- web-debug:web
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entrypoint: /app/test/wait-for-services.sh

modules/instrument_list/test/instrument_listTest.php

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*/
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function testInstrumentListDoespageLoad()
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{
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$this->markTestSkipped(
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'Test is outdated/broken. This module requires candID and sessionID query parameters'
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);
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$this->webDriver->get($this->url . "/instrument_list/");
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$bodyText = $this->webDriver->findElement(
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WebDriverBy::cssSelector("body")
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*/
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function testInstrumentListDoespageLoadWithPermission()
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{
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$this->markTestSkipped(
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'Test is outdated/broken. This module requires candID and sessionID query parameters'
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);
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$this->setupPermissions(array("access_all_profiles"));
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$this->webDriver->get($this->url . "/instrument_list/");
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$bodyText = $this->webDriver->findElement(

modules/next_stage/test/next_stageTest.php

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$Subproject->sendKeys("Control");
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$startVisit = $this->webDriver->findElement(WebDriverBy::Name("fire_away"));
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$startVisit->click();
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$startVisit->submit();
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$bodyText = $this->webDriver->findElement(WebDriverBy::cssSelector("body"))->getText();
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$this->assertContains("Both Date fields must match.", $bodyText);
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$Subproject->sendKeys("Control");
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$startVisit = $this->webDriver->findElement(WebDriverBy::Name("fire_away"));
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$startVisit->click();
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$startVisit->submit();
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$bodyText = $this->webDriver->findElement(WebDriverBy::cssSelector("body"))->getText();
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$this->assertContains("Next stage started.", $bodyText);

package.json

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"babel-cli": "^6.8.0",
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"babel-preset-es2015": "^6.6.0",
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"babel-preset-react": "^6.5.0",
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"eslint": "^3.1.1",
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"eslint-config-google": "^0.6.0",
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"eslint": "3.8.1",
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"eslint-config-google": "0.6.0",
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"eslint-plugin-react": "^5.2.2",
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"grunt": "^1.0.1",
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"grunt-babel": "^6.0.0",
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"jslint": "^0.10.3",
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"load-grunt-tasks": "^3.5.0"
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},
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"scripts": {
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"test": "echo \"Error: no test specified\" && exit 1"
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"lint:javascript": "./test/run-js-linter.sh",
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"lint:php": "./test/run-php-linter.sh",
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"tests:unit": "./test/dockerized-unit-tests.sh",
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"tests:unit:debug": "DEBUG=true ./test/dockerized-unit-tests.sh",
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"tests:integration": "./test/dockerized-integration-tests.sh",
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"tests:integration:debug": "DEBUG=true ./test/dockerized-integration-tests.sh"
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},
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"repository": {
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"type": "git",

test/README.md

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# Dockerized Test Suite
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## Requirements
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You will need Docker Engine, Docker Compose, and NodeJS.
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Please follow the directions [here](https://docs.docker.com/engine/installation/) to install Docker Engine. Be sure to also [create a Docker group](https://docs.docker.com/engine/installation/linux/ubuntulinux/#/create-a-docker-group) so Docker can be run without using `sudo`.
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Next, install Docker Compose:
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```
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curl -L https://github.com/docker/compose/releases/download/1.8.1/docker-compose-`uname -s`-`uname -m` > ~/docker-compose
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chmod +x ~/docker-compose
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sudo mv ~/docker-compose /usr/local/bin/docker-compose
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```
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Make sure you have NodeJS installed. If not, follow the instructions [here](https://nodejs.org/en/download/package-manager/).
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Finally, run `npm install` in the root folder (this is only required for Javascript linting).
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## Basic Workflow
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**To run all the unit tests:**
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```
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npm run tests:unit
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```
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**To run all of the integration tests:**
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```
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npm run tests:integration
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```
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You can see the integration tests in action by connecting your VNC viewer to `<host>:5900` and supplying the password `secret`.
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**To run PHP linting:**
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```
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npm run lint:php
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```
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**To run Javascript linting:**
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```
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npm run lint:javascript
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```
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## Advanced Workflow
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#### Command-Line Options
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You can pass any [PHPUnit command-line options](https://phpunit.de/manual/current/en/textui.html) by appending `--` followed by the options. For example, say you only wanted to run the unit tests contained in the `CandidateTest` class. To achieve this you could run the following command:
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```
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npm run tests:unit -- --filter CandidateTest
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```
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Or, to run a specific test within `CandidateTest`:
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```
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npm run tests:unit -- --filter CandidateTest::testValidatePSCID
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```
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#### Debugging
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Both the unit and integration tests can be run with XDebug enabled.
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```
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npm run tests:unit:debug
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```
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Or
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```
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npm run tests:integration:debug
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```
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You must specify a remote host for XDebug to connect to via the `XDEBUG_REMOTE_HOST` environment variable when using either of these commands.
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## Todo
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- Run integration tests in parallel
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## Issues
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- By default npm will output some irrelevant info when a script returns a non-zero error code, as described [here](https://github.com/npm/npm/issues/8821). To prevent this pass `-s` or `--silent` to `npm run`, e.g. `npm run -s tests:unit`.
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- Running the entire integration test suite with XDebug enabled sometimes results in a segmentation fault. This appears to be an issue with XDebug itself.

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