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Spine Segmentation

Key Investigators

Ron Alkalay (Beth Isreal Deaconess, Boston)
Steve Pieper (Isomics)
YOU

Project Description

Investigate and implement methods to segment the human spine from CT scans.

Objective

Ideal segmentation will independently segment and label the vertebral bodies.
We want the system to integrate with Slicer's segmentation infrastructure.
We think a deep learning approach using MONAILabel will be useful for this.

Approach and Plan

Learn as much as possible about MONAILabel
Investigate VerSe and if possible port it to Slicer/MONAI
Figure out if/how we can use spine CTs from IDC for training.

Progress and Next Steps

Describe specific steps you have actually done.
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Illustrations

Background and References