diff --git a/containers/popv/Dockerfile b/containers/popv/Dockerfile index 1467a68..d3415e3 100644 --- a/containers/popv/Dockerfile +++ b/containers/popv/Dockerfile @@ -1,6 +1,6 @@ FROM tensorflow/tensorflow:2.16.1 -RUN apt-get -y update && apt-get -y install python3-dev python3-pip g++ git wget && apt-get clean +RUN apt-get -y update && apt-get -y install git && apt-get clean COPY context/download-ontology.sh . RUN ./download-ontology.sh diff --git a/containers/popv/context/main.py b/containers/popv/context/main.py index b6e357a..1fa8549 100644 --- a/containers/popv/context/main.py +++ b/containers/popv/context/main.py @@ -126,14 +126,12 @@ def do_run( data = self.prepare_query(data, organ, metadata["model"], options) popv.annotation.annotate_data( data, - # TODO: onclass has been removed due to error in fast mode - # seen_result_key is not added to the result in fast mode but still expected during compute_consensus methods=[ "knn_on_scvi", "scanvi", "svm", "rf", - # "onclass", + "onclass", "celltypist", ], )