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poetry.lock
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# This file is automatically @generated by Poetry 1.8.5 and should not be changed by hand.
[[package]]
name = "annotated-types"
version = "0.7.0"
description = "Reusable constraint types to use with typing.Annotated"
optional = false
python-versions = ">=3.8"
files = [
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{file = "annotated_types-0.7.0.tar.gz", hash = "sha256:aff07c09a53a08bc8cfccb9c85b05f1aa9a2a6f23728d790723543408344ce89"},
]
[[package]]
name = "antlr4-python3-runtime"
version = "4.9.3"
description = "ANTLR 4.9.3 runtime for Python 3.7"
optional = false
python-versions = "*"
files = [
{file = "antlr4-python3-runtime-4.9.3.tar.gz", hash = "sha256:f224469b4168294902bb1efa80a8bf7855f24c99aef99cbefc1bcd3cce77881b"},
]
[[package]]
name = "arrow"
version = "1.3.0"
description = "Better dates & times for Python"
optional = false
python-versions = ">=3.8"
files = [
{file = "arrow-1.3.0-py3-none-any.whl", hash = "sha256:c728b120ebc00eb84e01882a6f5e7927a53960aa990ce7dd2b10f39005a67f80"},
{file = "arrow-1.3.0.tar.gz", hash = "sha256:d4540617648cb5f895730f1ad8c82a65f2dad0166f57b75f3ca54759c4d67a85"},
]
[package.dependencies]
python-dateutil = ">=2.7.0"
types-python-dateutil = ">=2.8.10"
[package.extras]
doc = ["doc8", "sphinx (>=7.0.0)", "sphinx-autobuild", "sphinx-autodoc-typehints", "sphinx_rtd_theme (>=1.3.0)"]
test = ["dateparser (==1.*)", "pre-commit", "pytest", "pytest-cov", "pytest-mock", "pytz (==2021.1)", "simplejson (==3.*)"]
[[package]]
name = "attrs"
version = "25.1.0"
description = "Classes Without Boilerplate"
optional = false
python-versions = ">=3.8"
files = [
{file = "attrs-25.1.0-py3-none-any.whl", hash = "sha256:c75a69e28a550a7e93789579c22aa26b0f5b83b75dc4e08fe092980051e1090a"},
{file = "attrs-25.1.0.tar.gz", hash = "sha256:1c97078a80c814273a76b2a298a932eb681c87415c11dee0a6921de7f1b02c3e"},
]
[package.extras]
benchmark = ["cloudpickle", "hypothesis", "mypy (>=1.11.1)", "pympler", "pytest (>=4.3.0)", "pytest-codspeed", "pytest-mypy-plugins", "pytest-xdist[psutil]"]
cov = ["cloudpickle", "coverage[toml] (>=5.3)", "hypothesis", "mypy (>=1.11.1)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "pytest-xdist[psutil]"]
dev = ["cloudpickle", "hypothesis", "mypy (>=1.11.1)", "pre-commit-uv", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "pytest-xdist[psutil]"]
docs = ["cogapp", "furo", "myst-parser", "sphinx", "sphinx-notfound-page", "sphinxcontrib-towncrier", "towncrier (<24.7)"]
tests = ["cloudpickle", "hypothesis", "mypy (>=1.11.1)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "pytest-xdist[psutil]"]
tests-mypy = ["mypy (>=1.11.1)", "pytest-mypy-plugins"]
[[package]]
name = "beautifulsoup4"
version = "4.13.3"
description = "Screen-scraping library"
optional = false
python-versions = ">=3.7.0"
files = [
{file = "beautifulsoup4-4.13.3-py3-none-any.whl", hash = "sha256:99045d7d3f08f91f0d656bc9b7efbae189426cd913d830294a15eefa0ea4df16"},
{file = "beautifulsoup4-4.13.3.tar.gz", hash = "sha256:1bd32405dacc920b42b83ba01644747ed77456a65760e285fbc47633ceddaf8b"},
]
[package.dependencies]
soupsieve = ">1.2"
typing-extensions = ">=4.0.0"
[package.extras]
cchardet = ["cchardet"]
chardet = ["chardet"]
charset-normalizer = ["charset-normalizer"]
html5lib = ["html5lib"]
lxml = ["lxml"]
[[package]]
name = "bioregistry"
version = "0.12.0"
description = "Integrated registry of biological databases and nomenclatures"
optional = false
python-versions = ">=3.9"
files = [
{file = "bioregistry-0.12.0-py3-none-any.whl", hash = "sha256:d20759eb281b381b371bf8bde50870c1958bdf9979790bb68f72d44db4dd7eaa"},
{file = "bioregistry-0.12.0.tar.gz", hash = "sha256:cee01f6c115254bf73343788a422ae7ff4c5d552368aa1feaece349aa8da8d9d"},
]
[package.dependencies]
click = "*"
curies = ">=0.7.0"
more_click = ">=0.1.2"
pydantic = {version = ">=2.0", extras = ["email"]}
pystow = ">=0.1.13"
requests = "*"
tqdm = "*"
[package.extras]
align = ["beautifulsoup4", "class-resolver", "defusedxml", "fairsharing-client (>=0.1.0)", "pandas", "pyyaml", "tabulate"]
charts = ["jinja2", "matplotlib", "matplotlib_venn", "pandas", "seaborn"]
docs = ["autodoc_pydantic", "sphinx (>=8)", "sphinx-click", "sphinx-rtd-theme (>=3.0)", "sphinx_automodapi"]
export = ["ndex2", "pyyaml", "rdflib", "rdflib-jsonld"]
gha = ["more_itertools"]
health = ["click_default_group", "jinja2", "pandas", "pyyaml", "tabulate"]
paper-ranking = ["indra", "more_itertools", "pandas", "scikit-learn", "tabulate"]
tests = ["coverage", "httpx", "indra", "more_itertools", "pytest", "scikit-learn"]
web = ["a2wsgi", "bootstrap-flask (<=2.0.0)", "curies[fastapi]", "fastapi", "flask (<2.2.4)", "markdown", "pyyaml", "rdflib", "rdflib-endpoint", "rdflib-jsonld", "uvicorn", "werkzeug (<2.3.0)"]
[[package]]
name = "cachetools"
version = "5.5.1"
description = "Extensible memoizing collections and decorators"
optional = false
python-versions = ">=3.7"
files = [
{file = "cachetools-5.5.1-py3-none-any.whl", hash = "sha256:b76651fdc3b24ead3c648bbdeeb940c1b04d365b38b4af66788f9ec4a81d42bb"},
{file = "cachetools-5.5.1.tar.gz", hash = "sha256:70f238fbba50383ef62e55c6aff6d9673175fe59f7c6782c7a0b9e38f4a9df95"},
]
[[package]]
name = "certifi"
version = "2025.1.31"
description = "Python package for providing Mozilla's CA Bundle."
optional = false
python-versions = ">=3.6"
files = [
{file = "certifi-2025.1.31-py3-none-any.whl", hash = "sha256:ca78db4565a652026a4db2bcdf68f2fb589ea80d0be70e03929ed730746b84fe"},
{file = "certifi-2025.1.31.tar.gz", hash = "sha256:3d5da6925056f6f18f119200434a4780a94263f10d1c21d032a6f6b2baa20651"},
]
[[package]]
name = "cfgraph"
version = "0.2.1"
description = "rdflib collections flattening graph"
optional = false
python-versions = "*"
files = [
{file = "CFGraph-0.2.1.tar.gz", hash = "sha256:b57fe7044a10b8ff65aa3a8a8ddc7d4cd77bf511b42e57289cd52cbc29f8fe74"},
]
[package.dependencies]
rdflib = ">=0.4.2"
[[package]]
name = "chardet"
version = "5.2.0"
description = "Universal encoding detector for Python 3"
optional = false
python-versions = ">=3.7"
files = [
{file = "chardet-5.2.0-py3-none-any.whl", hash = "sha256:e1cf59446890a00105fe7b7912492ea04b6e6f06d4b742b2c788469e34c82970"},
{file = "chardet-5.2.0.tar.gz", hash = "sha256:1b3b6ff479a8c414bc3fa2c0852995695c4a026dcd6d0633b2dd092ca39c1cf7"},
]
[[package]]
name = "charset-normalizer"
version = "3.4.1"
description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
optional = false
python-versions = ">=3.7"
files = [
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