Skip to content

Commit cd47a50

Browse files
gaballenchgaballench
committed
Updated analyses by adding C. robalito.
1 parent c024bad commit cd47a50

File tree

167 files changed

+368371
-215941
lines changed

Some content is hidden

Large Commits have some content hidden by default. Use the searchbox below for content that may be hidden.

167 files changed

+368371
-215941
lines changed

‎divtime/FigTree1_in_Ma.tre

+8
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,8 @@
1+
#NEXUS
2+
BEGIN TREES;
3+
4+
UTREE 1 = (Nematistius_pectoralis:
5+
92.9057, (((Hypopterus_macropterus: 32.7062, Psammoperca_waigiensis: 32.7062) [&95%HPD={10.7594, 58.7996}]: 25.2211, ((Lates_japonicus: 23.1159, Lates_calcarifer: 23.1159) [&95%HPD={14.3991, 31.6873}]: 04.0138, (Lates_niloticus: 9.7437, (Lates_stappersii: 5.8081, (Lates_microlepis: 0.3998, Lates_angustifrons: 0.3998) [&95%HPD={0.0, 1.15305}]: 5.4083) [&95%HPD={1.77437, 10.4981}]: 3.9356) [&95%HPD={4.61088, 15.5377}]: 17.3860) [&95%HPD={18.4007, 35.4881}]: 30.7976) [&95%HPD={50.7375, 71.1978}]: 30.6365, ((Xiphias_gladius: 63.6373, (Makaira_nigricans: 3.3245, (Tetrapturus_audax: 2.3322, Istiophorus_platypterus: 2.3322) [&95%HPD={1.10246, 3.73901}]: 0.9922) [&95%HPD={1.83129, 5.03865}]: 60.3128) [&95%HPD={56.3614, 70.8218}]: 22.3047, ((((Sphyraena_putnamae: 31.0763, ((Sphyraena_guachancho: 2.8305, Sphyraena_ensis: 2.8305) [&95%HPD={0.80324, 5.44998}]: 24.1800, (Sphyraena_forsteri: 22.6499, (Sphyraena_qenie: 14.2519, (Sphyraena_jello: 0.7983, Sphyraena_barracuda: 0.7983) [&95%HPD={0.19626, 1.57555}]: 13.4536) [&95%HPD={7.68084, 21.2706}]: 8.3980) [&95%HPD={15.3991, 30.2227}]: 4.3606) [&95%HPD={20.1161, 34.2195}]: 4.0658) [&95%HPD={23.3099, 39.2277}]: 27.2787, (((Sphyraena_flavicauda: 8.2437, Sphyraena_obtusata: 8.2437) [&95%HPD={1.76452, 16.1472}]: 23.8196, (Sphyraena_pinguis: 19.0418, (Sphyraena_chrysotaenia: 9.5750, Sphyraena_iburiensis: 9.5750) [&95%HPD={0.79872, 18.5739}]: 9.4667) [&95%HPD={12.1993, 26.3724}]: 13.0216) [&95%HPD={24.5139, 40.006}]: 22.2375, (((Sphyraena_argentea: 11.7175, Sphyraena_viridensis: 11.7175) [&95%HPD={3.05595, 22.124}]: 15.0318, (Sphyraena_idiastes: 17.2976, (Sphyraena_sphyraena: 9.9216, Sphyraena_borealis: 9.9216) [&95%HPD={5.56853, 15.0337}]: 7.3760) [&95%HPD={10.0357, 25.4369}]: 9.4518) [&95%HPD={19.6932, 33.6828}]: 14.1881, ((Sphyraena_novaehollandiae: 17.7750, Sphyraena_helleri: 17.7750) [&95%HPD={4.76534, 30.5084}]: 14.6220, ((Sphyraena_acutipinnis: 10.1174, (Sphyraena_waitii: 6.8356, Sphyraena_japonica: 6.8356) [&95%HPD={2.25518, 12.2466}]: 3.2818) [&95%HPD={4.32227, 16.4978}]: 7.9068, Sphyraena_africana: 18.0242) [&95%HPD={11.3638, 24.8404}]: 14.3728) [&95%HPD={25.2562, 39.7491}]: 8.5403) [&95%HPD={34.0786, 47.1819}]: 13.3634) [&95%HPD={51.0485, 57.2196}]: 4.0542) [&95%HPD={58.355, 58.356}]:
6+
20.1590, ((((Centropomus_mexicanus: 3.7714, Centropomus_parallelus: 3.7714) [&95%HPD={0.76952, 7.68166}]: 19.7960, ((Centropomus_viridis: 12.7228, (Centropomus_poeyi: 9.8249, (Centropomus_irae: 4.9648, Centropomus_undecimalis: 4.9648) [&95%HPD={2.5768, 7.71909}]: 4.8602) [&95%HPD={6.04733, 13.975}]: 2.8979) [&95%HPD={8.4751, 17.1978}]: 3.0298, Centropomus_nigrescens: 15.7526) [&95%HPD={10.8155, 20.7626}]: 7.8149) [&95%HPD={17.4732, 30.1431}]: 3.8630, (Centropomus_pectinatus: 5.9452, Centropomus_medius: 5.9452) [&95%HPD={2.99202, 9.45943}]: 21.4853) [&95%HPD={21.0421, 34.2284}]: 5.8283, ((Centropomus_unionensis: 11.7692, Centropomus_armatus: 11.7692) [&95%HPD={6.30684, 17.7173}]: 6.8456, (Centropomus_robalito: 10.9707, Centropomus_ensiferus: 10.9707) [&95%HPD={5.73071, 16.7648}]: 7.6440) [&95%HPD={12.9793, 24.2731}]: 14.6440) [&95%HPD={26.5458, 40.43}]: 45.2552) [&95%HPD={69.5377, 88.2765}]: 3.9901, ((Echeneis_naucrates: 60.4610, Coryphaena_equiselis: 60.4610) [&95%HPD={49.5478, 74.8194}]: 14.4814, (Gnathanodon_speciosus: 54.4911, Caranx_caninus: 54.4911) [&95%HPD={50.3871, 59.8206}]: 20.4514) [&95%HPD={64.8689, 84.8777}]: 7.5616) [&95%HPD={73.4513, 92.6103}]: 3.4379) [&95%HPD={76.1919, 96.3383}]: 2.6218) [&95%HPD={78.0028, 99.6444}]: 4.3419) [&95%HPD={79.3799, 106.374}];
7+
8+
END;

‎divtime/conc.csv

+53
Large diffs are not rendered by default.

‎divtime/concatenated.phylip

+54
Large diffs are not rendered by default.

‎divtime/concatenated.tsv

+53
Large diffs are not rendered by default.

‎divtime/final_mcmctree_highlighted_families.pdf

4.95 KB
Binary file not shown.

‎divtime/maxcred_tree_rooted.phylip

+2
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,2 @@
1+
53 1
2+
(Nematistius_pectoralis,((((Centropomus_armatus,Centropomus_unionensis),(Centropomus_ensiferus,Centropomus_robalito)),((((((Centropomus_irae,Centropomus_undecimalis),Centropomus_poeyi),Centropomus_viridis),Centropomus_nigrescens),(Centropomus_mexicanus,Centropomus_parallelus)),(Centropomus_medius,Centropomus_pectinatus)))'L(0.08480,0.1,0.1227303,0.025)',(((((Caranx_caninus,Gnathanodon_speciosus)'L(0.51900,0.1,0.08398711,0.025)',(Coryphaena_equiselis,Echeneis_naucrates)),((Hypopterus_macropterus,Psammoperca_waigiensis),((((Lates_angustifrons,Lates_microlepis),Lates_stappersii),Lates_niloticus),(Lates_calcarifer,Lates_japonicus)))'L(0.51900,0.1,0.1026201,0.025)'),((((((Sphyraena_acutipinnis,(Sphyraena_japonica,Sphyraena_waitii)),Sphyraena_africana),(Sphyraena_helleri,Sphyraena_novaehollandiae)),((Sphyraena_argentea,Sphyraena_viridensis),((Sphyraena_borealis,Sphyraena_sphyraena),Sphyraena_idiastes))),(((Sphyraena_chrysotaenia,Sphyraena_iburiensis),Sphyraena_pinguis),(Sphyraena_flavicauda,Sphyraena_obtusata))),(((((Sphyraena_barracuda,Sphyraena_jello),Sphyraena_qenie),Sphyraena_forsteri),(Sphyraena_ensis,Sphyraena_guachancho)),Sphyraena_putnamae))'L(0.53050,0.1,8.387935e-09,0.025)'),(((Istiophorus_platypterus,Tetrapturus_audax),Makaira_nigricans),Xiphias_gladius)'L(0.57600,0.1,0.03609402,0.025)')));

0 commit comments

Comments
 (0)