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Regexp for sequence identifiers #19

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fungs opened this issue Mar 3, 2015 · 1 comment
Open

Regexp for sequence identifiers #19

fungs opened this issue Mar 3, 2015 · 1 comment
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enhancement low priority
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1.5 pre

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@fungs
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fungs commented Mar 3, 2015

There are many tools which give space-separated information in the sequence identifier (assembly programs), others which parse the identifiers and report only a substring (NCBI Blast) and programs which don't support spaces at all (LAST and MAF format), we should consider using a regexp to internally handle these cases without having to modify the input FASTA files.
@fungs fungs added this to the 1.5 pre milestone Apr 28, 2015
@fungs fungs mentioned this issue Apr 28, 2015
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fungs commented Oct 1, 2021

this should work similar to the regex globbing parameter in binner

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