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isajson-biosamples test is updated to be synced with the new changes on mars-Receipt
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repository-services/isajson-biosamples/src/test/java/com/elixir/biohackaton/ISAToSRA/BiosampleReceiptToMarsTest.java

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@@ -1,20 +1,21 @@
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/** Elixir BioHackathon 2022 */
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package com.elixir.biohackaton.ISAToSRA;
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import com.elixir.biohackaton.ISAToSRA.biosamples.model.BiosampleAccessionsMap;
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import com.elixir.biohackaton.ISAToSRA.biosamples.service.BioSamplesSubmitter;
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import com.elixir.biohackaton.ISAToSRA.biosamples.service.MarsReceiptService;
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import com.elixir.biohackaton.ISAToSRA.receipt.isamodel.*;
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import com.elixir.biohackaton.ISAToSRA.receipt.marsmodel.*;
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import com.fasterxml.jackson.annotation.JsonInclude;
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import com.fasterxml.jackson.databind.ObjectMapper;
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import java.io.File;
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import java.nio.file.Files;
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import java.util.List;
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import org.junit.jupiter.api.Test;
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import org.springframework.boot.test.context.SpringBootTest;
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import com.elixir.biohackaton.ISAToSRA.biosamples.model.BiosampleAccessionsMap;
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import com.elixir.biohackaton.ISAToSRA.biosamples.service.BioSamplesSubmitter;
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import com.elixir.biohackaton.ISAToSRA.biosamples.service.MarsReceiptService;
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import com.elixir.biohackaton.ISAToSRA.receipt.isamodel.IsaJson;
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import com.elixir.biohackaton.ISAToSRA.receipt.isamodel.Study;
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import com.fasterxml.jackson.annotation.JsonInclude;
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import com.fasterxml.jackson.databind.ObjectMapper;
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@SpringBootTest
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class BiosampleReceiptToMarsTest {
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@@ -43,11 +44,11 @@ void convertToMars() {
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// Converting Biosample receipt to MARS receipt
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MarsReceiptService marsReceiptService = new MarsReceiptService();
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MarsReceipt marsReceipt = marsReceiptService.convertReceiptToMars(accessionsMap, isaJson);
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marsReceiptService.convertReceiptToMars(accessionsMap, isaJson);
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// Saving the result as a Json file
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String marsReceiptPath = "../../test-data/mars-biosample-receipt.json";
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Files.write(new File(marsReceiptPath).toPath(), jsonMapper.writeValueAsBytes(marsReceipt));
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Files.write(new File(marsReceiptPath).toPath(), jsonMapper.writeValueAsBytes(marsReceiptService.getMarsReceipt()));
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} catch (Exception ex) {
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System.console().printf("%s", ex);
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}

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