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# DeepVariant-GLnexus-workflow
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# DeepVariant+GLnexus workflows
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These [portable WDL](http://openwdl.org/) workflows use [DeepVariant](https://github.com/google/deepvariant) to call variants from WGS read alignments, followed by [GLnexus](https://github.com/dnanexus-rnd/GLnexus) to merge the resulting Genome VCF (gVCF) files for several samples into a Project VCF (pVCF). The [`wdl/`](https://github.com/dnanexus-rnd/DeepVariant-GLnexus-workflow/tree/master/wdl) directory has three nested workflows:
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