diff --git a/doc/06_quality_control.md b/doc/06_quality_control.md index 67c064a..1fc74c3 100644 --- a/doc/06_quality_control.md +++ b/doc/06_quality_control.md @@ -178,10 +178,16 @@ srun -p bmh -J khmer -t 20:00:00 --mem=21gb -c 1 --pty bash Since we changed computers, our conda environment was automatically deactivated. -Activate your project environment again: +Create a new environment: ``` -conda activate dib_rotation +conda create -n khmer +``` + +> This step (creating a new environment) was necessary because `khmer` requires a different python version than we have installed in our `dib_rotation` environment. You can compare the two environments with `conda list -n dib_rotation` and `conda list -n khmer`... after we finish setting up the `khmer` environment though! + +``` +mamba activate khmer ``` ### Install khmer diff --git a/doc/10_annotating_amino_acid_sequences.md b/doc/10_annotating_amino_acid_sequences.md index 4992fa6..3f4f7df 100644 --- a/doc/10_annotating_amino_acid_sequences.md +++ b/doc/10_annotating_amino_acid_sequences.md @@ -36,7 +36,7 @@ kofamscan is not available as a conda package, but being able to use the KEGG fr We'll create a new environment for kofamscan, and use conda to install all of its dependencies. ``` -mamba create -n kofamscan hmmer parallel ruby kofamscan +mamba create -n kofamscan hmmer parallel ruby kofamscan python=3.6 conda activate kofamscan ```