Taxonomic discovery with sourmash - change from sourmash sketch to sourmash sketch dna

[gedejer]

Tutorial has this command:

sourmash sketch -o SRR1976948.sig --name SRR1976948 -p scaled=2000,k=21,k=31,k=51,abund SRR1976948_*fastq.gz

Which gives error: sketch: error: argument subcmd: invalid choice: 'SRR1976948.sig' (choose from 'dna', 'rna', 'nucleotide', 'nt', 'fromfile', 'protein', 'aa', 'prot', 'translate')

Judging from previous issue, need to change to add dna, which worked

sourmash sketch dna -o SRR1976948.sig --name SRR1976948 -p scaled=2000,k=21,k=31,k=51,abund SRR1976948_*fastq.gz