allrefs.bib

@article {Darcy685644,
	keywords = {firstauthor},
	author = {Darcy, John L. and Washburne, Alex D. and Robeson, Michael S. and Prest, Tiffany and Schmidt, Steven K. and Lozupone, Catherine A.},
	title = {A phylogenetic model for the arrival of species into microbial communities and application to studies of the human microbiome},
	year = {2020},
	journal = {ISME J}
}
@article {Darcy640029,
	keywords = {firstauthor},
	author = {Darcy, John L. and Cobian, Gerald M. and Swift, Sean O. I. and Zahn, Geoffrey L. and Perry, Brian A. and Amend, Anthony S.},
	title = {Fungal communities living within leaves of native Hawaiian dicots are structured by landscape-scale variables as well as by host plants},
	year = {2020},
	journal = {Mol Ecol}
}
@article{Darcy2018a,
	keywords = {firstauthor},
	author = {Darcy, John L. and Gendron, Eli M. S. and Sommers, Pacifica and Porazinska, Dorota L. and Schmidt, Steven K.},
	journal = {Front Ecol Evol},
	title = {{Island Biogeography of Cryoconite Hole Bacteria in Antarctica's Taylor Valley and Around the World}},
	year = {2018}
}
@article{Darcy2018,
	keywords = {firstauthor},
	author = {Darcy, John L. and Schmidt, Steven K. and Knelman, Joey E. and Cleveland, Cory C. and Castle, Sarah C. and Nemergut, Diana R.},
	journal = {Sci Adv},
	title = {{Phosphorus, not nitrogen, limits plants and microbial primary producers following glacial retreat}},
	year = {2018}
}
@article{Darcy2017,
	keywords = {firstauthor},
	author = {Darcy, John L. and King, Andrew J. and Gendron, Eli M.S. and Schmidt, Steven K.},
	journal = {FEMS Microbiol Ecol},
	title = {{Spatial autocorrelation of microbial communities atop a debris-covered glacier is evidence of a supraglacial chronosequence}},
	year = {2017}
}
@article{Darcy2016,
	keywords = {firstauthor},
	author = {Darcy, John L. and Schmidt, Steven K.},
	journal = {Soil Biol Biochem},
	title = {{Nutrient limitation of microbial phototrophs on a debris-covered glacier}},
	year = {2016}
}

@article{Schmidt2015a,
	keywords = {firstauthor},
	author = {Schmidt, S. K. and Darcy, J. L.},
	journal = {Polar Biol},
	title = {{Phylogeny of ulotrichalean algae from extreme high-altitude and high-latitude ecosystems}},
	year = {2015}
}
@article{Darcy2011a,
	keywords = {firstauthor},
	author = {Darcy, John L. and Lynch, Ryan C. and King, Andrew J. and Robeson, Michael S. and Schmidt, Steven K.},
	journal = {PLoS ONE},
	title = {{Global distribution of Polaromonas phylotypes - evidence for a highly successful dispersal capacity}},
	year = {2011}
}
@article{Darcy2021,
	keywords = {firstauthor},
	author = {Darcy, J. L. and Swift, S. O. I., and Amend, A. S., and Lozupone, C.A.},
	journal = {In prep},
	title = {{Generalized specificity analysis for microbial communities, with examples from Hawaiian foliar endophytic fungi, Antarctic glacier bacteria, and the human gut microbiome.}},
	year = {2021}
}


@article{Aran2021,
	keywords = {coauthor},
	author = {Aran, P., and Aguilar, P., and Bowen, T., and Farson, M., and Tapia, J., and Vimercati, L., and Darcy, J.L., and Solon, A.J., and Porazinska, D.L., and Schmidt, S.K., and Dorador, C.},
	journal = {Aquat Conserv},
	title = {{Insights into an undescribed high‐elevation lake (6,170 m asl) on Volcán Llullaillaco: A physical and microbiological view}},
	year = {2021}
}
@article{Tipton2021,
	keywords = {coauthor},
	author = {Tipton, L., and Zahn, G.L., and Darcy, J.L., and Amend, A.S., and Hynson, N.A.},
	journal = {Microb Ecol},
	title = {{Hawaiian Fungal Amplicon Sequence Variants Reveal Otherwise Hidden Biogeography}},
	year = {2021}
}
@article{Hu2021,
	keywords = {coauthor},
	author = {Hu, W., and Schmidt, S.K., and Sommers, P., and Darcy, J.L., and Porazinska, D.L.},
	journal = {Ecosphere},
	title = {{Multiple‐trophic patterns of primary succession following retreat of a high‐elevation glacier}},
	year = {2021}
}
@article{Solon2021,
	keywords = {coauthor},
	author = {Solon, A., and Mastrangelo, C., and Vimercati, L., and Sommers, P., and Darcy, J.L., and Gendron, E., and Porazinska, D.L., and Schmidt, S.K.},
	journal = {Front Microbiol},
	title = {{Gullies and Moraines Are Islands of Biodiversity in an Arid, Mountain Landscape, Asgard Range, Antarctica}},
	year = {2021}
}
@incollection{porazinska2020,
	keywords = {coauthor},
	author = {Porazinska, D. L., and Hu, W., and Darcy, J. L., and Sommers, P., and Schmidt, S. K.},
	journal = {Journal of Nematology},
	title = {{Primary succession of nematode communities following retreat of a high elevation glacier}},
	year = {2020}
}
@incollection{Sommers2020,
	keywords = {coauthor},
	author = {Sommers, P., and Porazinska, D. L., and Darcy, J. L., and Vimercati, L., and Solon, A. J., and Schmidt, S. K.},
	journal = {Microorganisms},
	title = {{Microbial species–area relationships in Antarctic cryoconite holes depend on productivity}},
	year = {2020}
}
@incollection{schmidt2020,
	keywords = {coauthor},
	author = {Schmidt, S. K., and Sowell, P., and Schubert, Z. R., and Vimercati, L., and Solon, A. J., and Porazinska, D. L., and Sommers, P., and Darcy, J. L., and Gendron, E. M. S.},
	booktitle = {Microbial Ecosystems in Central Andes Extreme Environments},
	isbn = {978-3-030-36192-1},
	title = {{ Of Microbes and Mummies: Tales of Microbial Activity and Inactivity at 6000 masl}},
	year = {2020}
}
@article{Bueno2020,
	keywords = {coauthor},
	author = {Bueno de Mesquita, C. P., and Brigham, L. M., and Sommers, P., and Porazinska, D. L., and Darcy, J. L., and Suding, K. G., and Schmidt, S. K.},
	journal = {Biogeochem},
	title = { Evidence for phosphorus limitation in high-elevation unvegetated soils, Niwot Ridge, Colorado},
	year = {2019}
}

@article{Sommers2019b,
	keywords = {coauthor},
	author = {Sommers, P., and Fontenele, R. S., and Kringen, T., and Kraberger, S., and Porazinska, D. L., and Darcy, J. L., and Schmidt, S. K., and Varsani, A.},
	journal = {Viruses},
	title = {Single-stranded DNA viruses in Antarctic cryoconite holes},
	year = {2019}
}

@article{Sommers2019c,
	keywords = {coauthor},
	author = {Sommers, P. and Porazinska, D. L. and Darcy, J. L. and Zamora, F. and Fountain, A. G. and Schmidt, S. K.},
	journal = {Polar Biol},
	title = {Experimental cryoconite holes as mesocosms for studying community ecology},
	year = {2019}
}

@article{Bowen2019,
	keywords = {coauthor},
	author = {Bowen, T. and Darcy, J.L. and Schmidt, S.K.},
	journal = {Science},
	title = {RE: Pika's cold adaptation a liability with climate change},
	year = {2019}
}

@article{Gendron2019,
	keywords = {coauthor},
	author = {Gendron, E. M. S. and Darcy, J. L. and Hell, K. and Schmidt, S. K.},
	journal = {J Microbiol},
	title = {Structure of bacterial and eukaryote communities reflect in situ controls on community assembly in a high-alpine lake},
	year = {2019}
}

@article{Vimercati2019a,
	keywords = {coauthor},
	author = {Vimercati, L. and Darcy, J. L. and Schmidt, S. K.},
	title = {The disappearing periglacial ecosystem atop Mt. Kilimanjaro supports both cosmopolitan and endemic microbial communities},
	journal = {Sci Rep},
	year = {2019}
}
@article{Vargas2019,
	keywords = {coauthor},
	author = {Vargas-Gastélum, Lluvia and Chong-Robles, Jennyfers and Lago-Lestón, Asunción and Darcy, John L. and Amend, Anthony S. and Riquelme, Meritxell},
	title = {Targeted ITS1 sequencing unravels the mycodiversity of deep-sea sediments from the Gulf of Mexico},
	journal = {Environ Microbiol},
	year = {2019}
}
@article{Vimercati2019,
	keywords = {coauthor},
	author = {Lara Vimercati and Adam J. Solon and Alexandra Krinsky and Pablo Arán and Dorota L. Porazinska and John L. Darcy and Cristina Dorador and Steven K. Schmidt},
	title = {Nieves penitentes are a new habitat for snow algae in one of the most extreme high-elevation environments on Earth},
	journal = {AAAR},
	year  = {2019},
}
@ARTICLE{Tipton2019,
	keywords = {coauthor},
	author={Tipton, Laura and Darcy, John L. and Hynson, Nicole A.},   
	title={A Developing Symbiosis: Enabling Cross-Talk Between Ecologists and Microbiome Scientists},	
	journal={Front Microbiol},      
	year={2019}
}
@article{Sommers2019,
	keywords = {coauthor},
	author = {Sommers, Pacifica and Darcy, John L. and Porazinska, Dorota L. and Gendron, Eli M.S. and Fountain, Andrew G. and Zamora, Felix and Vincent, Kim and Cawley, Kaelin M. and Solon, Adam J. and Vimercati, Lara and Ryder, Jenna and Schmidt, Steven K.},
	journal = {Front Microbiol},
	title = {{Comparison of microbial communities in the sediments and water columns of frozen cryoconite holes in the McMurdo Dry Valleys, Antarctica}},
	year = {2019}
}
@misc{Schmidt2018,
	keywords = {coauthor},
	author = {Schmidt, S. K. and Gendron, E. M.S. and Vincent, K. and Solon, A. J. and Sommers, P. and Schubert, Z. R. and Vimercati, L. and Porazinska, D. L. and Darcy, J. L. and Sowell, P.},
	journal = {Anton Leeuw Int J G},
	title = {{Life at extreme elevations on Atacama volcanoes: the closest thing to Mars on Earth?}},
	year = {2018}
}
@article{Solon2018,
	keywords = {coauthor},
	author = {Solon, Adam J. and Vimercati, Lara and Darcy, J. L. and Ar{\'{a}}n, Pablo and Porazinska, Dorota and Dorador, C. and Far{\'{i}}as, M. E. and Schmidt, S. K.},
	journal = {Microb Ecol},
	title = {{Microbial Communities of High-Elevation Fumaroles, Penitentes, and Dry Tephra “Soils” of the Puna de Atacama Volcanic Zone}},
	year = {2018}
}
@article{Kennedy2018,
	keywords = {coauthor},
	author = {Kennedy, Rebekah C. and Fling, Russell R. and Robeson, Michael S. and Saxton, Arnold M. and Schneider, Liesel G. and Darcy, John L. and Bemis, David A. and Zhao, Ling and Chen, Jiangang},
	journal = {Environ Sci Pollut R},
	title = {{Temporal dynamics of gut microbiota in triclocarban-exposed weaned rats}},
	year = {2018}
}
@article{Sommers2018,
	keywords = {coauthor},
	author = {Sommers, Pacifica and Darcy, John L. and Gendron, Eli M.S. and Stanish, Lee F. and Bagshaw, Elizabeth A. and Porazinska, Dorota L. and Schmidt, Steven K.},
	journal = {FEMS Microbiol Ecol},
	title = {{Diversity patterns of microbial eukaryotes mirror those of bacteria in Antarctic cryoconite holes}},
	year = {2018}
}
@article{Knelman2017,
	keywords = {coauthor},
	author = {Knelman, Joseph E. and Graham, Emily B. and Ferrenberg, Scott and Lecoeuvre, Aur{\'{e}}lien and Labrado, Amanda and Darcy, John L. and Nemergut, Diana R. and Schmidt, Steven K.},
	journal = {Forests},
	title = {{Rapid shifts in soil nutrients and decomposition enzyme activity in early succession following forest fire}},
	year = {2017}
}
@misc{Schmidt2017,
	keywords = {coauthor},
	author = {Schmidt, Steven K. and Vimercati, Lara and Darcy, John L. and Ar{\'{a}}n, Pablo and Gendron, Eli M.S. and Solon, Adam J. and Porazinska, Dorota and Dorador, Cristina},
	booktitle = {Mycology},
	title = {{A Naganishia in high places: functioning populations or dormant cells from the atmosphere?}},
	year = {2017}
}
@article{Schmidt2017a,
	keywords = {coauthor},
	author = {Schmidt, S. K. and Darcy, J. L. and Sommers, Pacifica and Gunawan, Eva and Knelman, J. E. and Yager, Karina},
	journal = {Extremophiles},
	title = {{Freeze–thaw revival of rotifers and algae in a desiccated, high-elevation (5500 meters) microbial mat, high Andes, Per{\'{u}}}},
	year = {2017}
}
@article{Washburne2017,
	keywords = {coauthor},
	author = {Washburne, Alex D. and Silverman, Justin D. and Leff, Jonathan W. and Bennett, Dominic J. and Darcy, John L. and Mukherjee, Sayan and Fierer, Noah and David, Lawrence A.},
	journal = {PeerJ},
	title = {{Phylogenetic factorization of compositional data yields lineage-level associations in microbiome datasets}},
	year = {2017}
}
@article{Schmidt2016,
	keywords = {coauthor},
	author = {Schmidt, S. K. and Porazinska, D. and Concienne, B. L. and Darcy, J. L. and King, A. J. and Nemergut, D. R.},
	journal = {Ecosystems},
	title = {{Biogeochemical Stoichiometry Reveals P and N Limitation Across the Post-glacial Landscape of Denali National Park, Alaska}},
	year = {2016}
}
@article{Kennedy2016,
	keywords = {coauthor},
	author = {Kennedy, Rebekah C. and Fling, Russell R. and Robeson, Michael S. and Saxton, Arnold M. and Donnell, Robert L. and Darcy, John L. and Bemis, David A. and Liu, Jiang and Zhao, Ling and Chen, Jiangang},
	journal = {Sci Rep},
	title = {{Temporal Development of Gut Microbiota in Triclocarban Exposed Pregnant and Neonatal Rats}},
	year = {2016}
}
@article{Nemergut2016,
	keywords = {coauthor},
	author = {Nemergut, Diana R. and Knelman, Joseph E. and Ferrenberg, Scott and Bilinski, Teresa and Melbourne, Brett and Jiang, Lin and Violle, Cyrille and Darcy, John L. and Prest, Tiffany and Schmidt, Steven K. and Townsend, Alan R.},
	journal = {ISME J},
	title = {{Decreases in average bacterial community rRNA operon copy number during succession}},
	year = {2016}
}
@article{Schmidt2015,
	keywords = {coauthor},
	author = {Schmidt, S. K. and Darcy, J. L.},
	journal = {Polar Biol},
	title = {{Phylogeny of ulotrichalean algae from extreme high-altitude and high-latitude ecosystems}},
	year = {2015}
}
@article{Knelman2014,
	keywords = {coauthor},
	author = {Knelman, Joseph E and Schmidt, Steven K and Lynch, Ryan C and Darcy, John L and Castle, Sarah C and Cleveland, Cory C and Nemergut, Diana R},
	journal = {PloS one},
	title = {{Nutrient addition dramatically accelerates microbial community succession.}},
	year = {2014}
}
@article{Lynch2014,
	keywords = {coauthor},
	author = {Lynch, Ryan C and Darcy, John L and Kane, Nolan C and Nemergut, Diana R and Schmidt, Steve K},
	journal = {Front Microbiol},
	title = {{Metagenomic evidence for metabolism of trace atmospheric gases by high-elevation desert Actinobacteria.}},
	year = {2014}
}
@article{Schmidt2014,
	keywords = {coauthor},
	author = {Schmidt, S K and Nemergut, D R and Darcy, J L and Lynch, R},
	journal = {Mol Ecol},
	title = {{Do bacterial and fungal communities assemble differently during primary succession?}},
	year = {2014}
}
@article{Lynch2014a,
	keywords = {coauthor},
	author = {Lynch, Ryan C. and Darcy, John L. and Kane, Nolan C. and Nemergut, Diana R. and Schmidt, Steve K.},
	journal = {Front Microbiol},
	title = {{Metagenomic evidence for metabolism of trace atmospheric gases by high-elevation desert actinobacteria}},
	year = {2014}
}
@article{Knelman2014a,
	keywords = {coauthor},
	author = {Knelman, Joseph E. and Schmidt, Steven K. and Lynch, Ryan C. and Darcy, John L. and Castle, Sarah C. and Cleveland, Cory C. and Nemergut, Diana R.},
	journal = {PLoS ONE},
	title = {{Nutrient addition dramatically accelerates microbial community succession}},
	year = {2014}
}
@article{Naff2013,
	keywords = {coauthor},
	author = {Naff, C S and Darcy, J L and Schmidt, S K},
	journal = {Environ Microbiol},
	title = {{Phylogeny and biogeography of an uncultured clade of snow chytrids.}},
	year = {2013}
}
@article{Nemergut2013,
	keywords = {coauthor},
	author = {Nemergut, Diana R and Schmidt, Steven K and Fukami, Tadashi and O'Neill, Sean P and Bilinski, Teresa M and Stanish, Lee F and Knelman, Joseph E and Darcy, John L and Lynch, Ryan C and Wickey, Phillip and Ferrenberg, Scott},
	journal = {MMBR},
	title = {{Patterns and processes of microbial community assembly.}},
	year = {2013}
}
@article{Naff2013a,
	keywords = {coauthor},
	author = {Naff, C. S. and Darcy, J. L. and Schmidt, S. K.},
	journal = {Environ Microbiol},
	title = {{Phylogeny and biogeography of an uncultured clade of snow chytrids}},
	year = {2013}
}
@article{Schmidt2012,
	keywords = {coauthor},
	author = {Schmidt, Steve K. and Nemergut, Diana R. and Todd, Bryan T. and Lynch, Ryan C. and Darcy, John L. and Cleveland, Cory C. and King, Andrew J.},
	journal = {Plant Ecol Div},
	title = {{A simple method for determining limiting nutrients for photosynthetic crusts}},
	year = {2012}
}
@incollection{Rhodes2012,
	keywords = {coauthor},
	author = {Rhodes, M. and Knelman, J. and Lynch, R. C. and Darcy, J. L. and Nemergut, D. R. and Schmidt, S. K.},
	booktitle = {The Prokaryotes},
	isbn = {9783642301230},
	title = {{Alpine and arctic soil microbial communities}},
	year = {2012}
}