From c8aa5b0f1706a1a3823e6441c071a0f339c0bd1c Mon Sep 17 00:00:00 2001 From: "Gherman V. Uritskiy" Date: Tue, 28 Apr 2020 17:17:07 -0400 Subject: [PATCH] fixed false error bug --- bin/metawrap-modules/classify_bins.sh | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/bin/metawrap-modules/classify_bins.sh b/bin/metawrap-modules/classify_bins.sh index 634d43a..d6c0f0f 100755 --- a/bin/metawrap-modules/classify_bins.sh +++ b/bin/metawrap-modules/classify_bins.sh @@ -150,8 +150,8 @@ if [[ $? -ne 0 ]]; then error "Failed to run taxator. Exiting..."; fi comm "binning and consolidating classifications for each contig" sort -k1,1 ${out}/predictions.gff3 | binner -n classification -i genus:0.6 > ${out}/binned_predictions.txt -mv binning.log $out if [[ $? -ne 0 ]]; then error "Failed to run binner. Exiting..."; fi +mv binning.log $out comm "pulling out full taxonomy path with taxknife"