From 963ffaf497ef324474d96b3d184376f2739ae12a Mon Sep 17 00:00:00 2001 From: Christopher Tomkins-Tinch Date: Fri, 12 Apr 2024 14:43:20 -0400 Subject: [PATCH 1/2] update viral-baseimage 0.2.2 -> 0.2.3 (with fully-featured qsv) update viral-baseimage 0.2.2 -> 0.2.3 (with fully-featured qsv) --- Dockerfile | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Dockerfile b/Dockerfile index 6c45dfa5..2b6fcd1d 100644 --- a/Dockerfile +++ b/Dockerfile @@ -1,4 +1,4 @@ -FROM quay.io/broadinstitute/viral-baseimage:0.2.2 +FROM quay.io/broadinstitute/viral-baseimage:0.2.3 LABEL maintainer "viral-ngs@broadinstitute.org" From 6c24b585ff721b750f851da08a2186b0ed8d13eb Mon Sep 17 00:00:00 2001 From: Christopher Tomkins-Tinch Date: Fri, 12 Apr 2024 17:29:45 -0400 Subject: [PATCH 2/2] add pandas? --- requirements-conda.txt | 1 + 1 file changed, 1 insertion(+) diff --git a/requirements-conda.txt b/requirements-conda.txt index 8a5ad5c3..3a73b350 100644 --- a/requirements-conda.txt +++ b/requirements-conda.txt @@ -28,6 +28,7 @@ firecloud>=0.16.35 lz4>=2.2.1 jinja2>=2.11.3 matplotlib>=2.2.4 +pandas pysam>=0.20.0 pybedtools>=0.7.10 zstandard>=0.15.2