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Potential additional analytical methods #41

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afermg opened this issue May 24, 2024 · 1 comment
Open

Potential additional analytical methods #41

afermg opened this issue May 24, 2024 · 1 comment
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enhancement New feature or request jump_rr Related to query dataset generation

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@afermg
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afermg commented May 24, 2024

Based off https://github.com/jump-cellpainting/morphmap/issues/2.

Two additional analyses (which require very different methods are:

  1. Clustering/representation space of disease clusters. This can be done with simple clustering or a representation learning approach.
  2. Collective significant features for a given disease. This is doable with our current tools, may just require repurposing the GPU-based methods to compare individuals, or the p-values comparing distributions. If we are to keep it simple, the Earth Mover's Distance metric may come in handy.
@afermg afermg added enhancement New feature or request jump_rr Related to query dataset generation labels May 24, 2024
@afermg
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afermg commented Dec 3, 2024

The math of JUMP_rr may be moved to trommel

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Labels
enhancement New feature or request jump_rr Related to query dataset generation
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