Merge pull request #196 from bluescarni/pr/clang17_fix

clang 17 fix

Author: bluescarni

cmake/yacma/YACMACompilerLinkerSettings.cmake

@@ -82,6 +82,7 @@ if(NOT _YACMACompilerLinkerSettingsRun)
     # Configuration bits specific for GCC.
     if(YACMA_COMPILER_IS_GNUCXX)
         _YACMA_CHECK_ENABLE_CXX_FLAG(-fdiagnostics-color=auto)
+        _YACMA_CHECK_ENABLE_CXX_FLAG(-Woverloaded-virtual)
         # New in GCC 9.
         _YACMA_CHECK_ENABLE_DEBUG_CXX_FLAG(-Waddress-of-packed-member)
     endif()
@@ -109,7 +110,6 @@ if(NOT _YACMACompilerLinkerSettingsRun)
         _YACMA_CHECK_ENABLE_DEBUG_CXX_FLAG(-Wc99-designator)
         _YACMA_CHECK_ENABLE_DEBUG_CXX_FLAG(-Wreorder-init-list)
         _YACMA_CHECK_ENABLE_DEBUG_CXX_FLAG(-Wsizeof-pointer-div)
-        _YACMA_CHECK_ENABLE_DEBUG_CXX_FLAG(-Wsizeof-array-div)
         _YACMA_CHECK_ENABLE_DEBUG_CXX_FLAG(-Wxor-used-as-pow)
         _YACMA_CHECK_ENABLE_DEBUG_CXX_FLAG(-Wfinal-dtor-non-final-class)
         # New warnings in clang 11.
@@ -122,13 +122,31 @@ if(NOT _YACMACompilerLinkerSettingsRun)
         # NOTE: this is a new flag in Clang 13 which seems to give
         # incorrect warnings for UDLs.
         _YACMA_CHECK_ENABLE_DEBUG_CXX_FLAG(-Wno-reserved-identifier)
+        _YACMA_CHECK_ENABLE_DEBUG_CXX_FLAG(-Warray-bounds-pointer-arithmetic)
+        # New warnings in clang 14.
+        _YACMA_CHECK_ENABLE_DEBUG_CXX_FLAG(-Warray-parameter)
+        # NOTE: clang 17 enables by default a new compiler flag called "-fassume-unique-vtables":
+        #
+        # https://releases.llvm.org/17.0.1/tools/clang/docs/ReleaseNotes.html#c-language-changes
+        #
+        # This flag however seems to be buggy:
+        #
+        # https://github.com/llvm/llvm-project/issues/71196
+        #
+        # On our part, in several projects we are experiencing Boost.serialization failures when
+        # (de)serialising derived objects through pointers to bases. Thus, we forcibly disable
+        # this new flag.
+        _YACMA_CHECK_ENABLE_CXX_FLAG(-fno-assume-unique-vtables)
     endif()
 
     # Common configuration for GCC, clang and Intel.
     if(YACMA_COMPILER_IS_CLANGXX OR YACMA_COMPILER_IS_INTELXX OR YACMA_COMPILER_IS_GNUCXX)
         _YACMA_CHECK_ENABLE_DEBUG_CXX_FLAG(-Wall)
         _YACMA_CHECK_ENABLE_DEBUG_CXX_FLAG(-Wextra)
-        _YACMA_CHECK_ENABLE_DEBUG_CXX_FLAG(-Wnon-virtual-dtor)
+        # NOTE: this flag has been superseded by "-Wdelete-non-virtual-dtor"
+        # (enabled by "-Wall"). See:
+        # https://gcc.gnu.org/pipermail/gcc-cvs/2022-November/374730.html
+        # _YACMA_CHECK_ENABLE_DEBUG_CXX_FLAG(-Wnon-virtual-dtor)
         # NOTE: this flag is a bit too chatty, let's disable it for the moment.
         #_YACMA_CHECK_ENABLE_DEBUG_CXX_FLAG(-Wnoexcept)
         _YACMA_CHECK_ENABLE_DEBUG_CXX_FLAG(-Wlogical-op)

doc/changelog.rst

@@ -3,6 +3,16 @@
 Changelog
 =========
 
+6.0.1 (unreleased)
+------------------
+
+Fix
+~~~
+
+- Workaround for a clang 17 issue that would result in
+  runtime exceptions during (de)serialisation
+  (`#196 <https://github.com/bluescarni/heyoka.py/pull/196>`__).
+
 6.0.0 (2024-09-21)
 ------------------
 

tools/circleci_conda_heyoka_head_310.sh

@@ -19,7 +19,7 @@ bash miniforge.sh -b -p $HOME/miniforge
 # using deprecated scipy functions.
 conda create -y -p $deps_dir python=3.10 c-compiler cxx-compiler git pybind11 'numpy<2' \
     mpmath cmake llvmdev tbb-devel tbb astroquery libboost-devel 'mppp=1.*' \
-    sleef 'fmt<11' skyfield spdlog myst-nb matplotlib sympy 'scipy<1.14' pykep cloudpickle \
+    sleef fmt skyfield spdlog myst-nb matplotlib sympy 'scipy<1.14' pykep cloudpickle \
     'sphinx=7.*' 'sphinx-book-theme=1.*'
 source activate $deps_dir
 

tools/circleci_conda_heyoka_head_312.sh

@@ -14,7 +14,7 @@ wget https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge
 export deps_dir=$HOME/local
 export PATH="$HOME/miniforge/bin:$PATH"
 bash miniforge.sh -b -p $HOME/miniforge
-conda create -y -p $deps_dir python=3.12 c-compiler cxx-compiler git pybind11 'numpy<2' mpmath cmake llvmdev tbb-devel tbb libboost-devel 'mppp=1.*' sleef 'fmt<11' skyfield spdlog sympy cloudpickle
+conda create -y -p $deps_dir python=3.12 c-compiler cxx-compiler git pybind11 'numpy<2' mpmath cmake llvmdev tbb-devel tbb libboost-devel 'mppp=1.*' sleef fmt skyfield spdlog sympy cloudpickle
 source activate $deps_dir
 
 # Checkout, build and install heyoka's HEAD.

tools/circleci_conda_heyoka_head_39.sh

@@ -14,7 +14,7 @@ wget https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge
 export deps_dir=$HOME/local
 export PATH="$HOME/miniforge/bin:$PATH"
 bash miniforge.sh -b -p $HOME/miniforge
-conda create -y -p $deps_dir python=3.9 c-compiler cxx-compiler git pybind11 'numpy<2' mpmath cmake llvmdev tbb-devel tbb astroquery libboost-devel 'mppp=1.*' sleef 'fmt<11' skyfield spdlog myst-nb matplotlib sympy scipy pykep cloudpickle 'sphinx=7.*' 'sphinx-book-theme=1.*'
+conda create -y -p $deps_dir python=3.9 c-compiler cxx-compiler git pybind11 'numpy<2' mpmath cmake llvmdev tbb-devel tbb astroquery libboost-devel 'mppp=1.*' sleef fmt skyfield spdlog myst-nb matplotlib sympy scipy pykep cloudpickle 'sphinx=7.*' 'sphinx-book-theme=1.*'
 source activate $deps_dir
 
 export HEYOKA_PY_PROJECT_DIR=`pwd`

tools/circleci_ubuntu_arm64.sh

@@ -14,7 +14,7 @@ wget https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge
 export deps_dir=$HOME/local
 export PATH="$HOME/miniforge/bin:$PATH"
 bash miniforge.sh -b -p $HOME/miniforge
-conda create -y -q -p $deps_dir cxx-compiler c-compiler cmake llvmdev tbb-devel tbb astroquery libboost-devel 'mppp=1.*' sleef 'fmt<11' skyfield spdlog python=3.10 pybind11 'numpy<2' mpmath sympy scipy cloudpickle myst-nb matplotlib 'sphinx=7.*' 'sphinx-book-theme=1.*'
+conda create -y -q -p $deps_dir cxx-compiler c-compiler cmake llvmdev tbb-devel tbb astroquery libboost-devel 'mppp=1.*' sleef fmt skyfield spdlog python=3.10 pybind11 'numpy<2' mpmath sympy scipy cloudpickle myst-nb matplotlib 'sphinx=7.*' 'sphinx-book-theme=1.*'
 source activate $deps_dir
 
 # Checkout, build and install heyoka's HEAD.

tools/gha_conda_asan.sh

@@ -16,7 +16,7 @@ export PATH="$HOME/miniconda/bin:$PATH"
 bash miniconda.sh -b -p $HOME/miniconda
 conda config --add channels conda-forge
 conda config --set channel_priority strict
-conda create -y -q -p $deps_dir python=3.10 git pybind11 'numpy<2' mpmath cmake llvmdev tbb-devel tbb libboost-devel 'mppp=1.*' sleef 'fmt<11' skyfield spdlog sympy cloudpickle c-compiler cxx-compiler
+conda create -y -q -p $deps_dir python=3.10 git pybind11 'numpy<2' mpmath cmake llvmdev tbb-devel tbb libboost-devel 'mppp=1.*' sleef fmt skyfield spdlog sympy cloudpickle c-compiler cxx-compiler
 source activate $deps_dir
 
 export CXXFLAGS="$CXXFLAGS -fsanitize=address"

tools/gha_conda_docs.sh

@@ -19,7 +19,7 @@ bash miniforge.sh -b -p $HOME/miniforge
 # using deprecated scipy functions.
 conda create -y -p $deps_dir c-compiler cxx-compiler python=3.10 git pybind11 \
     ninja 'numpy<2' mpmath cmake llvmdev tbb-devel tbb astroquery libboost-devel \
-    'mppp=1.*' sleef 'fmt<11' skyfield spdlog myst-nb matplotlib sympy 'scipy<1.14' pykep cloudpickle \
+    'mppp=1.*' sleef fmt skyfield spdlog myst-nb matplotlib sympy 'scipy<1.14' pykep cloudpickle \
     'sphinx=7.*' 'sphinx-book-theme=1.*'
 source activate $deps_dir
 

tools/gha_conda_static.sh

@@ -16,7 +16,7 @@ export PATH="$HOME/miniconda/bin:$PATH"
 bash miniconda.sh -b -p $HOME/miniconda
 conda config --add channels conda-forge
 conda config --set channel_priority strict
-conda create -y -q -p $deps_dir python=3.10 git pybind11 'numpy<2' mpmath cmake llvmdev tbb-devel tbb libboost-devel 'mppp=1.*' sleef 'fmt<11' skyfield spdlog sympy cloudpickle c-compiler cxx-compiler numba zlib
+conda create -y -q -p $deps_dir python=3.10 git pybind11 'numpy<2' mpmath cmake llvmdev tbb-devel tbb libboost-devel 'mppp=1.*' sleef fmt skyfield spdlog sympy cloudpickle c-compiler cxx-compiler numba zlib
 source activate $deps_dir
 
 # Checkout, build and install heyoka's HEAD.

tools/gha_osx_heyoka_head.sh

@@ -11,7 +11,7 @@ wget https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge
 export deps_dir=$HOME/local
 export PATH="$HOME/miniconda/bin:$PATH"
 bash miniconda.sh -b -p $HOME/miniconda
-conda create -y -p $deps_dir python=3.11 'c-compiler<1.8' 'cxx-compiler<1.8' git pybind11 'numpy<2' cmake llvmdev tbb-devel tbb astroquery libboost-devel sleef 'fmt<11' skyfield spdlog sympy cloudpickle 'mppp=1.*'
+conda create -y -p $deps_dir python=3.11 c-compiler cxx-compiler git pybind11 'numpy<2' cmake llvmdev tbb-devel tbb astroquery libboost-devel sleef fmt skyfield spdlog sympy cloudpickle 'mppp=1.*'
 source activate $deps_dir
 
 # Checkout, build and install heyoka's HEAD.

tools/gha_osx_heyoka_head_static.sh

@@ -11,7 +11,7 @@ wget https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge
 export deps_dir=$HOME/local
 export PATH="$HOME/miniconda/bin:$PATH"
 bash miniconda.sh -b -p $HOME/miniconda
-conda create -y -p $deps_dir python=3.11 'c-compiler<1.8' 'cxx-compiler<1.8' git pybind11 'numpy<2' cmake llvmdev tbb-devel tbb astroquery libboost-devel sleef 'fmt<11' skyfield spdlog sympy cloudpickle 'mppp=1.*' numba
+conda create -y -p $deps_dir python=3.11 c-compiler cxx-compiler git pybind11 'numpy<2' cmake llvmdev tbb-devel tbb astroquery libboost-devel sleef fmt skyfield spdlog sympy cloudpickle 'mppp=1.*' numba
 source activate $deps_dir
 
 # Checkout, build and install heyoka's HEAD.

tools/travis_ubuntu_ppc64.sh

@@ -11,7 +11,7 @@ curl -L -o miniconda.sh https://github.com/conda-forge/miniforge/releases/latest
 export deps_dir=$HOME/local
 export PATH="$HOME/miniconda/bin:$PATH"
 bash miniconda.sh -b -p $HOME/miniconda
-conda create -y -q -p $deps_dir cxx-compiler c-compiler cmake llvmdev tbb-devel tbb astroquery libboost-devel sleef xtensor xtensor-blas blas blas-devel 'fmt<11' skyfield spdlog python pybind11 'numpy<2' mpmath sympy cloudpickle mppp git make
+conda create -y -q -p $deps_dir cxx-compiler c-compiler cmake llvmdev tbb-devel tbb astroquery libboost-devel sleef xtensor xtensor-blas blas blas-devel fmt skyfield spdlog python pybind11 'numpy<2' mpmath sympy cloudpickle mppp git make
 source activate $deps_dir
 
 # Checkout, build and install heyoka's HEAD.