README.md

How to use this repo

1. Fork this repo
2. Change parameters in notebooks/conf/00_env_variables.ipynb:
   • USER_ID - a number associated with your WUT email
   • TF_VAR_billing_account - billing account ID (GCP Console > Billing > Billing account ID)
3. Open the notebook 01_ds_lab_project_bootstrap.ipynb on Colab by clicking the badge below

• Bootstrap GCP project

4. Run the notebook 02_ds_lab_infra_setup.ipynb on Colab by clicking the badge

• Provision Big Data Lab resources

5. Change parameter in notebooks/01_ds_lab_project_bootstrap.ipynb and notebooks/02_ds_lab_infra_setup.ipynb:
   • USER_NAME - set to your GitHub username
6. Run both Colab notebooks.
7. Go to GCP Console > Dataproc > Workbench > Open JupyterLab
8. Clone the repo:

cd
git clone https://github.com/biodatageeks/ds-notebooks.git

11. Run the /root/ds-notebooks/session_1/ notebooks (on LocalDisk mount, not on GCS mount). (Kernel: Python 3)