Jenkinsfile

pipeline {
    agent any
    environment {
        MAKEFLAGS="-j${env.PARALLEL}"
        USE_CXX14=1
        STAN_BRANCH="master"
        STAN_MATH_BRANCH="master" 
        RSTAN_NEXT_VER="2.99" 
    }
    stages {
        stage('Install dependencies') {
            steps {
                // writeFile file: "~/.Renviron", text: "R_LIBS_USER=~/.RLibs"
                sh """
                    R -q -e 'dir.create("~/RLibs", recursive=TRUE)'
                    R -q -e 'cat("R_LIBS_USER=~/RLibs", file = "~/.Renviron")'
                    R -q -e '.libPaths()' 
                    R -e 'install.packages(c("devtools"), repos="http://cran.us.r-project.org")'
                    R -e 'update(devtools::package_deps("rstan",  dependencies=TRUE))'
                    R -e 'install.packages("RInside", repos="http://cran.us.r-project.org")'
                """
            }
        }
        stage('Build') {
            steps {
                sh """
                    cd StanHeaders
                    git submodule update --init --recursive --remote || echo "ok" 
                    cd inst/include/upstream && git checkout origin/${STAN_BRANCH}
                    cd ../../.. 
                    cd inst/include/mathlib && git checkout origin/${STAN_MATH_BRANCH}
                    cd ../../../.. 
                    R CMD build StanHeaders
                    sed -i.bak "s/^\\(Version.\\).*/\\1 ${RSTAN_NEXT_VER}/" ./rstan/rstan/DESCRIPTION
                    R CMD build --no-build-vignettes rstan/rstan
                """
            }
        }
        stage("Check timings and output") {
            steps {
                sh """
                    R CMD check --as-cran --timings StanHeaders_*.tar.gz || \
                      cat StanHeaders.Rcheck/00check.log
                    R CMD INSTALL StanHeaders_*.tar.gz
                    R CMD check --as-cran --timings --run-donttest --run-dontrun rstan_*.tar.gz || \
                      cat rstan.Rcheck/00check.log
                """
            }
        }
        stage("Check additional unit tests") {
            steps {
                sh """
                    R CMD INSTALL rstan_*.tar.gz
                    cd rstan
                    make test-R || echo "extra unit tests failed"
                    cd ..
                """
            }
        }
        stage("Check rstanarm") {
            steps {
                sh """
                    R -e 'update(devtools::package_deps("rstanarm"))'
                   curl -O https://cran.r-project.org/src/contrib/rstanarm_2.15.3.tar.gz
#                    R CMD check --as-cran --timings --run-donttest --run-dontrun rstanarm_*.tar.gz || \
#                      cat rstanarm.Rcheck/00check.log
                """
            }
        }
    }
    post {
        always {
            warnings consoleParsers: [[parserName: 'GNU C Compiler (gcc)']], failedTotalAll: '0', usePreviousBuildAsReference: false, canRunOnFailed: true
            warnings consoleParsers: [[parserName: 'Clang (LLVM based)']], failedTotalAll: '0', usePreviousBuildAsReference: false, canRunOnFailed: true
            deleteDir()
        }
    }
}