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clean up for CRAN
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‎DESCRIPTION

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Type: Package
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Title: A Statistically Sound 'data.frame' Processor/Conditioner
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Version: 0.5.31
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Date: 2017-01-22
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Date: 2017-04-13
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Author: John Mount, Nina Zumel
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URL: https://github.com/WinVector/vtreat
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BugReports: https://github.com/WinVector/vtreat/issues

‎NEWS.md

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'vtreat' 0.5.31 2017/01/23
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'vtreat' 0.5.31 2017/04/13
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‎cran-comments.md

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## Test environments
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* local OS X install x86_64-apple-darwin13.4.0 (64-bit)
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* R version 3.3.1
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* using R version 3.3.3 (2017-03-06)
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* win-builder (devel and release)
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## R CMD check --as-cran vtreat_0.5.30.tar.gz
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* using R version 3.3.2 (2016-10-31)
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## R CMD check --as-cran vtreat_0.5.31.tar.gz
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* using R version 3.3.3 (2017-03-06)
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* using platform: x86_64-apple-darwin13.4.0 (64-bit)
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* using session charset: UTF-8
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* using option ‘--as-cran’
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R CMD check results
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0 errors | 0 warnings | 0 notes
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Status: OK
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Note_to_CRAN_maintainers
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Maintainer: ‘John Mount <[email protected]>’

‎inst/doc/vtreat.html

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<meta name="date" content="2017-04-13" />
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<title>vtreat package</title>
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<h1 class="title toc-ignore">vtreat package</h1>
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<h4 class="author"><em>John Mount, Nina Zumel</em></h4>
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<h4 class="date"><em>2017-03-04</em></h4>
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<h4 class="date"><em>2017-04-13</em></h4>
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## 3 c 30
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## 4 &lt;NA&gt; NA</code></pre>
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<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r">treatmentsC &lt;-<span class="st"> </span><span class="kw">designTreatmentsC</span>(dTrainC,<span class="kw">colnames</span>(dTrainC),<span class="st">'y'</span>,<span class="ot">TRUE</span>)</code></pre></div>
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<pre><code>## [1] &quot;desigining treatments Sat Mar 4 05:16:19 2017&quot;
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## [1] &quot;designing treatments Sat Mar 4 05:16:19 2017&quot;
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## [1] &quot; have level statistics Sat Mar 4 05:16:19 2017&quot;
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## [1] &quot;design var x Sat Mar 4 05:16:19 2017&quot;
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## [1] &quot;design var z Sat Mar 4 05:16:19 2017&quot;
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## [1] &quot; scoring treatments Sat Mar 4 05:16:19 2017&quot;
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## [1] &quot;have treatment plan Sat Mar 4 05:16:19 2017&quot;
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## [1] &quot;rescoring complex variables Sat Mar 4 05:16:19 2017&quot;
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## [1] &quot;done rescoring complex variables Sat Mar 4 05:16:19 2017&quot;</code></pre>
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<pre><code>## [1] &quot;desigining treatments Thu Apr 13 17:31:14 2017&quot;
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## [1] &quot;designing treatments Thu Apr 13 17:31:14 2017&quot;
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## [1] &quot; have level statistics Thu Apr 13 17:31:14 2017&quot;
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## [1] &quot;design var x Thu Apr 13 17:31:14 2017&quot;
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## [1] &quot;design var z Thu Apr 13 17:31:15 2017&quot;
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## [1] &quot; scoring treatments Thu Apr 13 17:31:15 2017&quot;
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## [1] &quot;have treatment plan Thu Apr 13 17:31:15 2017&quot;
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## [1] &quot;rescoring complex variables Thu Apr 13 17:31:15 2017&quot;
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## [1] &quot;done rescoring complex variables Thu Apr 13 17:31:15 2017&quot;</code></pre>
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<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">print</span>(treatmentsC)</code></pre></div>
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<pre><code>## $treatments
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## $treatments[[1]]
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## 3 c 30
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## 4 &lt;NA&gt; NA</code></pre>
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<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r">treatmentsN =<span class="st"> </span><span class="kw">designTreatmentsN</span>(dTrainN,<span class="kw">colnames</span>(dTrainN),<span class="st">'y'</span>)</code></pre></div>
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<pre><code>## [1] &quot;desigining treatments Sat Mar 4 05:16:19 2017&quot;
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## [1] &quot;designing treatments Sat Mar 4 05:16:19 2017&quot;
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## [1] &quot; have level statistics Sat Mar 4 05:16:19 2017&quot;
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## [1] &quot;design var x Sat Mar 4 05:16:19 2017&quot;
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## [1] &quot;design var z Sat Mar 4 05:16:19 2017&quot;
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## [1] &quot; scoring treatments Sat Mar 4 05:16:19 2017&quot;
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## [1] &quot;have treatment plan Sat Mar 4 05:16:19 2017&quot;
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## [1] &quot;rescoring complex variables Sat Mar 4 05:16:19 2017&quot;
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## [1] &quot;done rescoring complex variables Sat Mar 4 05:16:20 2017&quot;</code></pre>
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<pre><code>## [1] &quot;desigining treatments Thu Apr 13 17:31:15 2017&quot;
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## [1] &quot;designing treatments Thu Apr 13 17:31:15 2017&quot;
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## [1] &quot; have level statistics Thu Apr 13 17:31:15 2017&quot;
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## [1] &quot;design var x Thu Apr 13 17:31:15 2017&quot;
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## [1] &quot;design var z Thu Apr 13 17:31:15 2017&quot;
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## [1] &quot; scoring treatments Thu Apr 13 17:31:15 2017&quot;
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## [1] &quot;have treatment plan Thu Apr 13 17:31:15 2017&quot;
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## [1] &quot;rescoring complex variables Thu Apr 13 17:31:15 2017&quot;
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## [1] &quot;done rescoring complex variables Thu Apr 13 17:31:15 2017&quot;</code></pre>
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<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">print</span>(treatmentsN)</code></pre></div>
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<pre><code>## $treatments
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## $treatments[[1]]

‎inst/doc/vtreatCrossFrames.html

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<h1 class="title toc-ignore">vtreat cross frames</h1>
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<h4 class="author"><em>John Mount, Nina Zumel</em></h4>
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<span class="st">'y'</span>,<span class="ot">TRUE</span>,
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<span class="dt">rareCount=</span><span class="dv">0</span> <span class="co"># Note: usually want rareCount&gt;0, setting to zero to illustrate problem</span>
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)</code></pre></div>
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<pre><code>## [1] &quot;desigining treatments Sat Mar 4 05:16:20 2017&quot;
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## [1] &quot;designing treatments Sat Mar 4 05:16:20 2017&quot;
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## [1] &quot; have level statistics Sat Mar 4 05:16:20 2017&quot;
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## [1] &quot;design var xBad1 Sat Mar 4 05:16:20 2017&quot;
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## [1] &quot;design var xBad2 Sat Mar 4 05:16:20 2017&quot;
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## [1] &quot;design var xBad3 Sat Mar 4 05:16:20 2017&quot;
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## [1] &quot;design var xGood1 Sat Mar 4 05:16:20 2017&quot;
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## [1] &quot;design var xGood2 Sat Mar 4 05:16:20 2017&quot;
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## [1] &quot; scoring treatments Sat Mar 4 05:16:20 2017&quot;
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## [1] &quot;have treatment plan Sat Mar 4 05:16:20 2017&quot;
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## [1] &quot;rescoring complex variables Sat Mar 4 05:16:20 2017&quot;
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## [1] &quot;done rescoring complex variables Sat Mar 4 05:16:21 2017&quot;</code></pre>
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<pre><code>## [1] &quot;desigining treatments Thu Apr 13 17:31:16 2017&quot;
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## [1] &quot;designing treatments Thu Apr 13 17:31:16 2017&quot;
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## [1] &quot; have level statistics Thu Apr 13 17:31:16 2017&quot;
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## [1] &quot;design var xBad1 Thu Apr 13 17:31:16 2017&quot;
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## [1] &quot;design var xBad2 Thu Apr 13 17:31:16 2017&quot;
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## [1] &quot;design var xBad3 Thu Apr 13 17:31:16 2017&quot;
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## [1] &quot;design var xGood1 Thu Apr 13 17:31:16 2017&quot;
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## [1] &quot;design var xGood2 Thu Apr 13 17:31:16 2017&quot;
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## [1] &quot; scoring treatments Thu Apr 13 17:31:16 2017&quot;
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## [1] &quot;have treatment plan Thu Apr 13 17:31:16 2017&quot;
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## [1] &quot;rescoring complex variables Thu Apr 13 17:31:16 2017&quot;
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## [1] &quot;done rescoring complex variables Thu Apr 13 17:31:17 2017&quot;</code></pre>
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<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r">dTrainTreated &lt;-<span class="st"> </span>vtreat::<span class="kw">prepare</span>(treatments,dTrain,
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<span class="dt">pruneSig=</span><span class="kw">c</span>() <span class="co"># Note: usually want pruneSig to be a small fraction, setting to null to illustrate problems</span>
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)
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<span class="st">'y'</span>,<span class="ot">TRUE</span>,
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)</code></pre></div>
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<pre><code>## [1] &quot;desigining treatments Sat Mar 4 05:16:21 2017&quot;
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## [1] &quot; have level statistics Sat Mar 4 05:16:21 2017&quot;
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## [1] &quot;design var xBad1 Sat Mar 4 05:16:21 2017&quot;
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## [1] &quot;design var xBad2 Sat Mar 4 05:16:21 2017&quot;
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## [1] &quot;design var xBad3 Sat Mar 4 05:16:21 2017&quot;
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## [1] &quot;design var xGood1 Sat Mar 4 05:16:21 2017&quot;
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## [1] &quot; scoring treatments Sat Mar 4 05:16:21 2017&quot;
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## [1] &quot;have treatment plan Sat Mar 4 05:16:22 2017&quot;
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## [1] &quot;done rescoring complex variables Sat Mar 4 05:16:22 2017&quot;</code></pre>
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<pre><code>## [1] &quot;desigining treatments Thu Apr 13 17:31:17 2017&quot;
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## [1] &quot;designing treatments Thu Apr 13 17:31:17 2017&quot;
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## [1] &quot; have level statistics Thu Apr 13 17:31:17 2017&quot;
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## [1] &quot;design var xBad1 Thu Apr 13 17:31:17 2017&quot;
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## [1] &quot;design var xBad2 Thu Apr 13 17:31:17 2017&quot;
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## [1] &quot;design var xBad3 Thu Apr 13 17:31:17 2017&quot;
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## [1] &quot;design var xGood1 Thu Apr 13 17:31:17 2017&quot;
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## [1] &quot; scoring treatments Thu Apr 13 17:31:17 2017&quot;
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## [1] &quot;have treatment plan Thu Apr 13 17:31:17 2017&quot;
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## [1] &quot;rescoring complex variables Thu Apr 13 17:31:17 2017&quot;
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## [1] &quot;done rescoring complex variables Thu Apr 13 17:31:18 2017&quot;</code></pre>
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<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r">dTrainTreated &lt;-<span class="st"> </span>vtreat::<span class="kw">prepare</span>(treatments,dTrain,
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newvars &lt;-<span class="st"> </span><span class="kw">setdiff</span>(<span class="kw">colnames</span>(dTrainTreated),<span class="st">'y'</span>)

‎inst/doc/vtreatGrouping.html

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‎inst/doc/vtreatOverfit.html

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<pre><code>## [1] &quot;desigining treatments Thu Apr 13 17:31:24 2017&quot;
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## [1] &quot;designing treatments Thu Apr 13 17:31:24 2017&quot;
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## [1] &quot; have level statistics Thu Apr 13 17:31:24 2017&quot;
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## [1] &quot;design var x Thu Apr 13 17:31:24 2017&quot;
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## [1] &quot;done rescoring complex variables Thu Apr 13 17:31:24 2017&quot;</code></pre>
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## [1] &quot;done rescoring complex variables Sat Mar 4 05:16:29 2017&quot;</code></pre>
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<pre><code>## [1] &quot;desigining treatments Thu Apr 13 17:31:25 2017&quot;
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)

‎inst/doc/vtreatRareLevels.html

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‎inst/doc/vtreatScaleMode.html

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‎inst/doc/vtreatSignificance.html

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<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r">treatmentsC &lt;-<span class="st"> </span>vtreat::<span class="kw">designTreatmentsC</span>(d,<span class="kw">c</span>(<span class="st">'catVarNoise'</span>,<span class="st">'catVarPerfect'</span>),<span class="st">'y'</span>,<span class="ot">TRUE</span>)</code></pre></div>
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<pre><code>## [1] &quot;desigining treatments Sat Mar 4 05:16:36 2017&quot;
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## [1] &quot;designing treatments Sat Mar 4 05:16:36 2017&quot;
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## [1] &quot; have level statistics Sat Mar 4 05:16:36 2017&quot;
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## [1] &quot;design var catVarNoise Sat Mar 4 05:16:36 2017&quot;
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## [1] &quot;done rescoring complex variables Sat Mar 4 05:16:37 2017&quot;</code></pre>
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<pre><code>## [1] &quot;desigining treatments Thu Apr 13 17:31:31 2017&quot;
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## [1] &quot;designing treatments Thu Apr 13 17:31:31 2017&quot;
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## [1] &quot; have level statistics Thu Apr 13 17:31:32 2017&quot;
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## [1] &quot;design var catVarNoise Thu Apr 13 17:31:32 2017&quot;
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## [1] &quot;design var catVarPerfect Thu Apr 13 17:31:32 2017&quot;
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## [1] &quot; scoring treatments Thu Apr 13 17:31:32 2017&quot;
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## [1] &quot;have treatment plan Thu Apr 13 17:31:32 2017&quot;
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## [1] &quot;rescoring complex variables Thu Apr 13 17:31:32 2017&quot;
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## [1] &quot;done rescoring complex variables Thu Apr 13 17:31:32 2017&quot;</code></pre>
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<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="co"># Estimate effect significance (not coefficient significance).</span>
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estSigGLM &lt;-<span class="st"> </span>function(xVar,yVar,<span class="dt">numberOfHiddenDegrees=</span><span class="dv">0</span>) {
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d &lt;-<span class="st"> </span><span class="kw">data.frame</span>(<span class="dt">x=</span>xVar,<span class="dt">y=</span>yVar,<span class="dt">stringsAsFactors =</span> <span class="ot">FALSE</span>)

‎inst/doc/vtreatSplitting.html

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<meta name="author" content="John Mount, Nina Zumel" />
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<meta name="date" content="2017-04-13" />
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<title>vtreat splitting</title>
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<h1 class="title toc-ignore">vtreat splitting</h1>
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<h4 class="author"><em>John Mount, Nina Zumel</em></h4>
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<h4 class="date"><em>2017-03-04</em></h4>
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<h4 class="date"><em>2017-04-13</em></h4>
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