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min_tests.py
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# Copyright (c) MONAI Consortium
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
# http://www.apache.org/licenses/LICENSE-2.0
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from __future__ import annotations
import os
import sys
import unittest
from pathlib import Path
def run_testsuit():
"""
Load test cases by excluding those need external dependencies.
The loaded cases should work with "requirements-min.txt"::
# in the monai repo folder:
pip install -r requirements-min.txt
QUICKTEST=true python -m tests.min_tests
:return: a test suite
"""
exclude_cases = [ # these cases use external dependencies
"test_ahnet",
"test_arraydataset",
"test_auto3dseg_bundlegen",
"test_auto3dseg_ensemble",
"test_auto3dseg_hpo",
"test_auto3dseg",
"test_bundle_onnx_export",
"test_bundle_trt_export",
"test_bundle_push_to_hf_hub",
"test_cachedataset",
"test_cachedataset_parallel",
"test_cachedataset_persistent_workers",
"test_cachentransdataset",
"test_check_missing_files",
"test_compute_f_beta",
"test_compute_ho_ver_maps",
"test_compute_ho_ver_maps_d",
"test_compute_panoptic_quality",
"test_contrastive_loss",
"test_convert_to_onnx",
"test_convert_to_trt",
"test_csv_dataset",
"test_csv_iterable_dataset",
"test_cumulative_average_dist",
"test_sampler_dist",
"test_dataset",
"test_dataset_summary",
"test_deepedit_transforms",
"test_deepedit_interaction",
"test_deepgrow_dataset",
"test_deepgrow_interaction",
"test_deepgrow_transforms",
"test_detect_envelope",
"test_dints_network",
"test_distance_transform_edt",
"test_efficientnet",
"test_ensemble_evaluator",
"test_ensure_channel_first",
"test_ensure_channel_firstd",
"test_fill_holes",
"test_fill_holesd",
"test_foreground_mask",
"test_foreground_maskd",
"test_global_mutual_information_loss",
"test_grid_patch",
"test_gmm",
"test_handler_metrics_reloaded",
"test_handler_average_precision",
"test_handler_checkpoint_loader",
"test_handler_checkpoint_saver",
"test_handler_classification_saver",
"test_handler_classification_saver_dist",
"test_handler_confusion_matrix",
"test_handler_confusion_matrix_dist",
"test_handler_decollate_batch",
"test_handler_early_stop",
"test_handler_garbage_collector",
"test_handler_hausdorff_distance",
"test_handler_ignite_metric",
"test_handler_lr_scheduler",
"test_handler_mean_dice",
"test_handler_panoptic_quality",
"test_handler_mean_iou",
"test_handler_metrics_saver",
"test_handler_metrics_saver_dist",
"test_handler_mlflow",
"test_handler_nvtx",
"test_handler_parameter_scheduler",
"test_handler_post_processing",
"test_handler_prob_map_producer",
"test_handler_regression_metrics",
"test_handler_regression_metrics_dist",
"test_handler_rocauc",
"test_handler_rocauc_dist",
"test_handler_smartcache",
"test_handler_stats",
"test_handler_surface_distance",
"test_handler_tb_image",
"test_handler_tb_stats",
"test_handler_validation",
"test_hausdorff_distance",
"test_header_correct",
"test_hilbert_transform",
"test_hovernet_loss",
"test_image_dataset",
"test_image_rw",
"test_img2tensorboard",
"test_integration_fast_train",
"test_integration_gpu_customization",
"test_integration_segmentation_3d",
"test_integration_lazy_samples",
"test_integration_sliding_window",
"test_integration_unet_2d",
"test_integration_workflows",
"test_integration_workflows_gan",
"test_integration_bundle_run",
"test_integration_autorunner",
"test_integration_nnunetv2_runner",
"test_integration_nnunet_bundle",
"test_invert",
"test_invertd",
"test_iterable_dataset",
"test_keep_largest_connected_component",
"test_keep_largest_connected_componentd",
"test_label_filter",
"test_lltm",
"test_lmdbdataset",
"test_lmdbdataset_dist",
"test_load_image",
"test_load_imaged",
"test_load_spacing_orientation",
"test_mednistdataset",
"test_milmodel",
"test_mlp",
"test_nifti_header_revise",
"test_nifti_rw",
"test_nuclick_transforms",
"test_nrrd_reader",
"test_occlusion_sensitivity",
"test_orientation",
"test_orientationd",
"test_patchembedding",
"test_persistentdataset",
"test_pil_reader",
"test_plot_2d_or_3d_image",
"test_png_rw",
"test_prepare_batch_default",
"test_prepare_batch_diffusion",
"test_prepare_batch_extra_input",
"test_prepare_batch_hovernet",
"test_rand_grid_patch",
"test_rand_rotate",
"test_rand_rotated",
"test_rand_zoom",
"test_rand_zoomd",
"test_randtorchvisiond",
"test_rankfilter_dist",
"test_resample_backends",
"test_resize",
"test_resized",
"test_resample_to_match",
"test_resample_to_matchd",
"test_rotate",
"test_rotated",
"test_save_image",
"test_save_imaged",
"test_selfattention",
"test_senet",
"test_smartcachedataset",
"test_spacing",
"test_spacingd",
"test_splitdimd",
"test_surface_distance",
"test_surface_dice",
"test_testtimeaugmentation",
"test_torchvision",
"test_torchvisiond",
"test_transchex",
"test_transformerblock",
"test_trt_compile",
"test_unetr",
"test_unetr_block",
"test_vit",
"test_vitautoenc",
"test_vnet",
"test_write_metrics_reports",
"test_wsireader",
"test_zoom",
"test_zoom_affine",
"test_zoomd",
"test_prepare_batch_default_dist",
"test_bundle_verify_metadata",
"test_bundle_verify_net",
"test_bundle_ckpt_export",
"test_bundle_utils",
"test_bundle_init_bundle",
"test_fastmri_reader",
"test_metrics_reloaded",
"test_spatial_combine_transforms",
"test_bundle_workflow",
"test_zarr_avg_merger",
"test_perceptual_loss",
"test_ultrasound_confidence_map_transform",
"test_vista3d_utils",
"test_vista3d_transforms",
"test_matshow3d",
]
assert sorted(exclude_cases) == sorted(set(exclude_cases)), f"Duplicated items in {exclude_cases}"
files = [f.relative_to(Path(__file__).parent.parent) for f in Path(__file__).parent.rglob("test_*.py")]
files = [str(f).replace(os.sep, ".").replace(".py", "") for f in files]
cases = []
for test_module in files:
test_case = test_module.split(".")[-1]
if test_case in exclude_cases:
exclude_cases.remove(test_case)
print(f"skipping {test_module}")
else:
print(f"adding {test_module}")
cases.append(test_module)
exclude_cases = [str(list(Path(__file__).parent.rglob(f"*{et}*"))[0]) for et in exclude_cases]
assert not exclude_cases, f"items in exclude_cases not used: {' '.join(exclude_cases)}"
test_suite = unittest.TestLoader().loadTestsFromNames(cases)
return test_suite
if __name__ == "__main__":
# testing import submodules
from monai.utils.module import load_submodules
_, err_mod = load_submodules(sys.modules["monai"], True)
assert not err_mod, f"err_mod={err_mod} not empty"
# testing all modules
test_runner = unittest.TextTestRunner(stream=sys.stdout, verbosity=2)
result = test_runner.run(run_testsuit())
sys.exit(int(not result.wasSuccessful()))