You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Copy file name to clipboardexpand all lines: README.md
+3
Original file line number
Diff line number
Diff line change
@@ -149,6 +149,9 @@ The webserver will start initialising, create any missing required tables in the
149
149
#### Notes
150
150
* The organisms table is prepopulated on creation however all but human are turned off. Set the active column to 1 in the database to turn on an organism (Example (this will activate mouse): `update taxon set active=1 where taxon_id=10090`)
151
151
* If a required table is not found in the database upon application startup it will create it, it will NOT delete existing data.
152
+
* In order to access the RDMMN shared data system (international search), your application must use HTTPs. If you do not have HTTPs setup for you domain, you can consult the following guides on how to set it up:
rdp.faq.answers.privacy=The registry is password-protected and the information you enter will be kept secure. \
45
-
The visibility of your information depends on your <a href="#privacy-settings">Data Privacy \
46
-
and International Sharing settings</a> on the Profile page.
45
+
The visibility of your information depends on your <a href="#privacy-settings">Data Privacy</a> \
46
+
and <a href="#isearch">Partner registry sharing settings</a> on the Profile page.
47
47
48
-
rdp.faq.answers.privacy-settings=Data Privacy Settings section on your Profile page lets you choose your local data sharing preferences. The default setting for the registry is pre-selected, but can be changed. The options are: \
49
-
<ul><li><b>private (admin-only)</b> - your information will only be accessible by \
48
+
rdp.faq.answers.privacy-settings=Data Privacy Settings section on your Profile page lets you choose your local \
49
+
data sharing preferences. The default setting for the registry is pre-selected, but can be changed. The options are: \
50
+
<ul><li><b>private</b> - your information will only be accessible by \
50
51
Network administrators for matching you to a new rare disease gene and considering you for funding opportunities.</li> \
51
-
<li><b>shared</b> - your information will be accessible by other researchers who are registered.\
52
-
Registered users will be able to access your information through the provided search interface.</li>\
53
-
<li><b>public</b> - your information will be visible publicly. Your information will be shared (see above)\
54
-
with registered users and will be accessible to non-registered users through the registry’s public search webpage (<i>${rdp.site.host}</i>)</li></ul>
52
+
<li><b>shared</b> - your information will be accessible by other researchers who are registered.\
53
+
Registered users will be able to access your information through the provided search interface.</li>\
54
+
<li><b>public</b> - your information will be visible publicly. Your information will be shared (see above)\
55
+
with registered users and will be accessible to non-registered users through the registry's public search webpage (<i>${rdp.site.host}</i>)</li></ul>
55
56
56
57
rdp.faq.answers.isearch=<p>The RDMM Network has recently established linkages with similar rare disease networks around the world, \
57
58
with the intention to enable matches across borders when there is no MO expertise within the country where the disease variant is discovered. \
58
-
We have shared the registry software with these international networks and implemented changes so that these different software instances can exchange data in a secure way.\
59
+
We have shared the registry software with these partner networks and implemented changes so that these different software instances \
60
+
can exchange data in a secure way. \
59
61
<p/><p>\
60
-
International Sharing section on your Profile page gives you the option to set your preference for sharing your data with the RDMM Network's international \
61
-
partners for the purposes of establishing connections between international clinician sciences and Canadian model organism researchers. \
62
-
The internationally shared data will only be visible to the administrators of remote registries. The default setting, that the data is shared internationally, \
63
-
is pre-selected, but can be changed (unless your data privacy level is "public", in which case the "international sharing" will be the only option).</p>
62
+
Partner registry sharing section on your Profile page gives you the option to set your preference for sharing your data with the RDMM Network's \
63
+
partner registries for the purposes of establishing connections between clinician sciences who are submitting their rare \
64
+
disease genes to partner registries and Canadian model organism researchers. \
65
+
The shared data will only be visible to the administrators of the partner registries. \
66
+
If your data privacy level is set to "public", partner registries will gain access automatically.</p>
64
67
65
68
rdp.faq.answers.whatnow=In response to a Connection \
66
69
Application, the Scientific Advisory Committee will search the \
privatestaticfinalStringAPI_VERSION = "1.0.0";//TODO update every time there is any change in how the API works.
34
34
privatestaticfinalStringMISCONF_REMOTE_ADMIN = "The remote admin account is misconfigured! Remote searches won't be able to authenticate even with valid security tokens!";
## Whether the search page is accessible by visitors (i.e. non-registered users)
101
+
## whether the public search webpage will be shown (the root URL for the registry).
102
+
## If "false" is selected, the root URL we go directly to login/register page.
102
103
rdp.settings.privacy.public-search=true
103
-
## Whether the search page is accessible by registered users
104
+
## Whether logged in users will be able to access the Search tab and thus perform searches of shared and public data.
104
105
rdp.settings.privacy.registered-search=true
105
-
## 0 = private, 1 = shared with registered users, 2 = public
106
+
## Default Data Privacy Level. New users will have this option selected. 0 = private, 1 = shared with registered users, 2 = public
106
107
rdp.settings.privacy.default-level=0
107
-
## Minimum allowed privacy level
108
+
## Minimum allowed Data Privacy Level. Options lower than this level will not be shown in the user’s Profile.
108
109
rdp.settings.privacy.min-level=0
109
-
## share with international instances
110
+
## Default setting for partner registries sharing. If true, new users will have the sharing setting enabled by default.
110
111
rdp.settings.privacy.default-sharing=false
111
-
## whether users are allowed to change their privacy settings
112
+
## Determines if users are allowed to change their privacy settings. If "false" the Data Privacy Settings section in the Profile will not be displayed.
112
113
rdp.settings.privacy.customizable-level=false
113
-
## whether users are allowed to change their international sharing setting
114
+
## Determines if users are allowed to change their partner registries sharing setting. If "false" the "Share data with partner registries" section in the Profile will not be displayed.
114
115
rdp.settings.privacy.customizable-sharing=false
115
-
## whether users are allowed to hide their gene-list when their data is shared or public
116
+
## Allows users to hide their genelist (but still show their profile info) in search results when their data privacy level is 1 or 2. If "false" the option will no be displayed in the Profile.
0 commit comments