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microbio content: isolation and cultivation #307

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magelm opened this issue Jan 24, 2025 · 0 comments
Open

microbio content: isolation and cultivation #307

magelm opened this issue Jan 24, 2025 · 0 comments
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question Further information is requested either from the issue creator or the N4M git-committee

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@magelm
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magelm commented Jan 24, 2025

Hey,

Tom C would like to contribute more microbio specific content and I'm unsure were to contribute his following text.
Pretty sure we can expand this by making env/ biological subcategories according to our N4M metadatastandards (e.g., host-associated isolates; soil etc.)
Thanks for your help,
Maja

The text:

In addition to the direct analysis of microbial ecosystems using molecular techniques, cultivation-based approaches are very important for microbiota research. The isolation and characterization of strains make it possible to describe novel taxonomic and functional diversity, define the mechanisms underlying microbe-microbe and microbe-host interactions, and open avenues for biotechnological and clinical applications. Working with isolates generates a lot of technical, environmental, and biological data and metadata that must be taken care of according to the [FAIR principles]({% link __Research-Data-Management/04-fair.md %}). Moreover, the use of isolates must adhere to the Nagoya protocol. With NFDI4Microbiota, the University Hospital of RWTH Aachen and the Leibniz institute DSMZ generate public collections of bacterial isolates from the intestine of human and animals to help the community. The naming of novel bacteria improves the resolution of microbiota analysis by high-throughput molecular methods, and researchers can use the isolates for their own experiments, enabling further progress in the field.
Human intestinal bacterial collection (HiBC)
www.hibc.rwth-aachen.de
Mouse intestinal bacterial collection (miBC):
www.dsmz.de/miBC
Pig intestinal bacterial collection (Pibac):
www.dsmz.de/pibac
Chicken intestinal bacterial collection (ChiBAC):
www.dsmz.de/chibac

@magelm magelm added the question Further information is requested either from the issue creator or the N4M git-committee label Jan 24, 2025
@magelm magelm changed the title microbio content: isolation and cultiavtion microbio content: isolation and cultivation Jan 24, 2025
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