Add MICM, TUV-x to CAM-SIMA

[K20shores]

Nice to have, not required

• Create Spack build option #18
• MUSICA environment modules #54
• Add github action to autoformat code #94

Documentation

• Create documentation for MUSICA #63
• Create a MUSICA tutorial for adding MUSICA to a new host model #69

General

• NVidia tests failing #108

MICM

• Add Solver creating function to MUSICA interface #33
• Update MICM wrapper in Atmospheric Physics to use use Fortran Solver creation/destruction functions #48
• Add error handling for MUSICA interface #38
• Remove remaining template template parameters #134
• Check cmake test logic #103
• MICM solver parameters #58
• Vector-ordered Rosenbrock Solver #55
• Add configuration for Terminator chemistry #123
• Allow mapping between host species and MICM species #66
• Return MICM solver state details from micm_solve() #83
• Add option for creating a third-body species in the MICM configuration #115
• Allow use of VectorMatrix in CAM-SIMA #117
• JSON Parsing #60

TUV-x

• Link TUV-x to MUSICA Fortran wrapper library #29
• Allow API users to create and destroy instances of TUV-x #90
• Add a usage of TUVx to the dockerfiles in the atmospheric physics/CAM-SIMA repositories #46
• Allow TUV-x grid data to be updated through the API #120
• Allow TUV-x profile data to be updated through the API #121
• Allow TUV-x radiator data to be updated through the API #122
• Add run function to TUV-x wrapper #43
• Add configuration for Terminator chemistry #123
• Investigate whether assert failures in TUV-x actually end the run of a fortran host application #118
• Facilitate porting of rate constants to MICM #119
• Allow TUV-x grid data to be updated through the API #120
• Allow TUV-x profile data to be updated through the API #121
• Allow TUV-x radiator data to be updated through the API #122
• Remove all stops tuv-x#87
• Use string_t in micm and tuvx f90 musica fortran files #138

[mattldawson]

will track these issues using the MICM, TUV-x in CAM-SIMA milestone