[Tech] Bump the non-major-dependencies group in /datascience with 4 updates (#4064)

[//]: # (dependabot-start)
⚠️  **Dependabot is rebasing this PR** ⚠️ 

Rebasing might not happen immediately, so don't worry if this takes some
time.

Note: if you make any changes to this PR yourself, they will take
precedence over the rebase.

---

[//]: # (dependabot-end)

Bumps the non-major-dependencies group in /datascience with 4 updates:
[pre-commit](https://github.com/pre-commit/pre-commit),
[geoalchemy2](https://github.com/geoalchemy/geoalchemy2),
[h3](https://github.com/uber/h3-py) and
[pypdf](https://github.com/py-pdf/pypdf).

Updates `pre-commit` from 4.0.1 to 4.1.0
<details>
<summary>Release notes</summary>
<p><em>Sourced from <a
href="https://github.com/pre-commit/pre-commit/releases">pre-commit's
releases</a>.</em></p>
<blockquote>
<h2>pre-commit v4.1.0</h2>
<h3>Features</h3>
<ul>
<li>Add <code>language: julia</code>.
<ul>
<li><a
href="https://redirect.github.com/pre-commit/pre-commit/issues/3348">#3348</a>
PR by <a
href="https://github.com/fredrikekre"><code>@​fredrikekre</code></a>.</li>
<li><a
href="https://redirect.github.com/pre-commit/pre-commit/issues/2689">#2689</a>
issue <a
href="https://github.com/jmuchovej"><code>@​jmuchovej</code></a>.</li>
</ul>
</li>
</ul>
<h3>Fixes</h3>
<ul>
<li>Disable automatic toolchain switching for <code>language:
golang</code>.
<ul>
<li><a
href="https://redirect.github.com/pre-commit/pre-commit/issues/3304">#3304</a>
PR by <a
href="https://github.com/AleksaC"><code>@​AleksaC</code></a>.</li>
<li><a
href="https://redirect.github.com/pre-commit/pre-commit/issues/3300">#3300</a>
issue by <a
href="https://github.com/AleksaC"><code>@​AleksaC</code></a>.</li>
<li><a
href="https://redirect.github.com/pre-commit/pre-commit/issues/3149">#3149</a>
issue by <a
href="https://github.com/nijel"><code>@​nijel</code></a>.</li>
</ul>
</li>
<li>Fix <code>language: r</code> installation when initiated by RStudio.
<ul>
<li><a
href="https://redirect.github.com/pre-commit/pre-commit/issues/3389">#3389</a>
PR by <a
href="https://github.com/lorenzwalthert"><code>@​lorenzwalthert</code></a>.</li>
<li><a
href="https://redirect.github.com/pre-commit/pre-commit/issues/3385">#3385</a>
issue by <a
href="https://github.com/lorenzwalthert"><code>@​lorenzwalthert</code></a>.</li>
</ul>
</li>
</ul>
</blockquote>
</details>
<details>
<summary>Changelog</summary>
<p><em>Sourced from <a
href="https://github.com/pre-commit/pre-commit/blob/main/CHANGELOG.md">pre-commit's
changelog</a>.</em></p>
<blockquote>
<h1>4.1.0 - 2025-01-20</h1>
<h3>Features</h3>
<ul>
<li>Add <code>language: julia</code>.
<ul>
<li><a
href="https://redirect.github.com/pre-commit/pre-commit/issues/3348">#3348</a>
PR by <a
href="https://github.com/fredrikekre"><code>@​fredrikekre</code></a>.</li>
<li><a
href="https://redirect.github.com/pre-commit/pre-commit/issues/2689">#2689</a>
issue <a
href="https://github.com/jmuchovej"><code>@​jmuchovej</code></a>.</li>
</ul>
</li>
</ul>
<h3>Fixes</h3>
<ul>
<li>Disable automatic toolchain switching for <code>language:
golang</code>.
<ul>
<li><a
href="https://redirect.github.com/pre-commit/pre-commit/issues/3304">#3304</a>
PR by <a
href="https://github.com/AleksaC"><code>@​AleksaC</code></a>.</li>
<li><a
href="https://redirect.github.com/pre-commit/pre-commit/issues/3300">#3300</a>
issue by <a
href="https://github.com/AleksaC"><code>@​AleksaC</code></a>.</li>
<li><a
href="https://redirect.github.com/pre-commit/pre-commit/issues/3149">#3149</a>
issue by <a
href="https://github.com/nijel"><code>@​nijel</code></a>.</li>
</ul>
</li>
<li>Fix <code>language: r</code> installation when initiated by RStudio.
<ul>
<li><a
href="https://redirect.github.com/pre-commit/pre-commit/issues/3389">#3389</a>
PR by <a
href="https://github.com/lorenzwalthert"><code>@​lorenzwalthert</code></a>.</li>
<li><a
href="https://redirect.github.com/pre-commit/pre-commit/issues/3385">#3385</a>
issue by <a
href="https://github.com/lorenzwalthert"><code>@​lorenzwalthert</code></a>.</li>
</ul>
</li>
</ul>
</blockquote>
</details>
<details>
<summary>Commits</summary>
<ul>
<li><a
href="https://github.com/pre-commit/pre-commit/commit/b152e922ef11a97efe22ca7dc4f90011f0d1711c"><code>b152e92</code></a>
v4.1.0</li>
<li><a
href="https://github.com/pre-commit/pre-commit/commit/c3125a4d36912c768bfa5dcb2b79d6f4179d79ed"><code>c3125a4</code></a>
Merge pull request <a
href="https://redirect.github.com/pre-commit/pre-commit/issues/3389">#3389</a>
from lorenzwalthert/dev-always-unset-renv</li>
<li><a
href="https://github.com/pre-commit/pre-commit/commit/c2c061cf63e00a3ff8c88a9054c47e96a36f2daa"><code>c2c061c</code></a>
fix: ensure env patch is applied for vanilla emulation</li>
<li><a
href="https://github.com/pre-commit/pre-commit/commit/cd429db5e2172e51099716efd58a15e76a1719a7"><code>cd429db</code></a>
Merge pull request <a
href="https://redirect.github.com/pre-commit/pre-commit/issues/3382">#3382</a>
from pre-commit/pre-commit-ci-update-config</li>
<li><a
href="https://github.com/pre-commit/pre-commit/commit/9b9f8e254d46da65c8544244c423596d54260e24"><code>9b9f8e2</code></a>
[pre-commit.ci] pre-commit autoupdate</li>
<li><a
href="https://github.com/pre-commit/pre-commit/commit/86300a4a7e5441aad007d83c1101d8a8eb767ad7"><code>86300a4</code></a>
Merge pull request <a
href="https://redirect.github.com/pre-commit/pre-commit/issues/3376">#3376</a>
from pre-commit/r-gone</li>
<li><a
href="https://github.com/pre-commit/pre-commit/commit/77edad8455e88b403e055d2692c9545085cf3edb"><code>77edad8</code></a>
install r on ubuntu runners</li>
<li><a
href="https://github.com/pre-commit/pre-commit/commit/18b393905e24c730eeb15754f6f275a9d27e396f"><code>18b3939</code></a>
Merge pull request <a
href="https://redirect.github.com/pre-commit/pre-commit/issues/3375">#3375</a>
from pre-commit/dotnet-tests-ubuntu-latest</li>
<li><a
href="https://github.com/pre-commit/pre-commit/commit/31cb945ffb860f6f8176642d1a27af40eeec554d"><code>31cb945</code></a>
Merge pull request <a
href="https://redirect.github.com/pre-commit/pre-commit/issues/3374">#3374</a>
from pre-commit/docker-image-tests-ubuntu-22-not-pre...</li>
<li><a
href="https://github.com/pre-commit/pre-commit/commit/28c3d81bd27fe5e62eead459c1963a582e763bd7"><code>28c3d81</code></a>
update .net tests to use .net 8</li>
<li>Additional commits viewable in <a
href="https://github.com/pre-commit/pre-commit/compare/v4.0.1...v4.1.0">compare
view</a></li>
</ul>
</details>
<br />

Updates `geoalchemy2` from 0.16.0 to 0.17.0
<details>
<summary>Release notes</summary>
<p><em>Sourced from <a
href="https://github.com/geoalchemy/geoalchemy2/releases">geoalchemy2's
releases</a>.</em></p>
<blockquote>
<h2>0.17.0</h2>
<h2>What's Changed</h2>
<ul>
<li>CI: Fix Pypy job by <a
href="https://github.com/adrien-berchet"><code>@​adrien-berchet</code></a>
in <a
href="https://redirect.github.com/geoalchemy/geoalchemy2/pull/528">geoalchemy/geoalchemy2#528</a></li>
<li>Perf: Enable cache, fix value casting for MySQL and MariaDB and add
plugin for Engine creation by <a
href="https://github.com/adrien-berchet"><code>@​adrien-berchet</code></a>
<a href="https://github.com/calebj"><code>@​calebj</code></a> in <a
href="https://redirect.github.com/geoalchemy/geoalchemy2/pull/529">geoalchemy/geoalchemy2#529</a></li>
<li>Release/0.17.0 by <a
href="https://github.com/adrien-berchet"><code>@​adrien-berchet</code></a>
in <a
href="https://redirect.github.com/geoalchemy/geoalchemy2/pull/531">geoalchemy/geoalchemy2#531</a></li>
</ul>
<p><strong>Full Changelog</strong>: <a
href="https://github.com/geoalchemy/geoalchemy2/compare/0.16.0...0.17.0">https://github.com/geoalchemy/geoalchemy2/compare/0.16.0...0.17.0</a></p>
</blockquote>
</details>
<details>
<summary>Changelog</summary>
<p><em>Sourced from <a
href="https://github.com/geoalchemy/geoalchemy2/blob/master/CHANGES.txt">geoalchemy2's
changelog</a>.</em></p>
<blockquote>
<h2>0.17.0</h2>
<ul>
<li>Perf: Enable cache for all types of GeoAlchemy2 <a
href="https://github.com/adrien-berchet"><code>@​adrien-berchet</code></a>
(<a
href="https://redirect.github.com/geoalchemy/geoalchemy2/issues/525">#525</a>)</li>
<li>Feat: Add new plugin to automatically attach events based on the
engine dialect <a
href="https://github.com/adrien-berchet"><code>@​adrien-berchet</code></a>
(<a
href="https://redirect.github.com/geoalchemy/geoalchemy2/issues/525">#525</a>)</li>
<li>CI: Disable SQLite for Pypy job <a
href="https://github.com/adrien-berchet"><code>@​adrien-berchet</code></a>
(<a
href="https://redirect.github.com/geoalchemy/geoalchemy2/issues/528">#528</a>)</li>
</ul>
</blockquote>
</details>
<details>
<summary>Commits</summary>
<ul>
<li><a
href="https://github.com/geoalchemy/geoalchemy2/commit/eab5b71ed0b2cd90254bd8c20b9da35df955805d"><code>eab5b71</code></a>
Release/0.17.0 (<a
href="https://redirect.github.com/geoalchemy/geoalchemy2/issues/531">#531</a>)</li>
<li><a
href="https://github.com/geoalchemy/geoalchemy2/commit/c2d8f10541104c454d13bc55575f9fc8ecb612db"><code>c2d8f10</code></a>
Perf: Enable cache, fix value casting for MySQL and MariaDB and add
plugin fo...</li>
<li><a
href="https://github.com/geoalchemy/geoalchemy2/commit/c5816982fe65a6d0e267c9b6db1e6ad2c6add2b9"><code>c581698</code></a>
CI: Disable SQLite for Pypy job (<a
href="https://redirect.github.com/geoalchemy/geoalchemy2/issues/528">#528</a>)</li>
<li>See full diff in <a
href="https://github.com/geoalchemy/geoalchemy2/compare/0.16.0...0.17.0">compare
view</a></li>
</ul>
</details>
<br />

Updates `h3` from 4.1.2 to 4.2.1
<details>
<summary>Release notes</summary>
<p><em>Sourced from <a
href="https://github.com/uber/h3-py/releases">h3's
releases</a>.</em></p>
<blockquote>
<h2>v4.2.1</h2>
<h2>[4.2.1] - 2025-01-31</h2>
<ul>
<li>Correct pyproject.toml links for PyPI (<a
href="https://redirect.github.com/uber/h3-py/issues/441">#441</a>)</li>
<li>Update coverage badge (<a
href="https://redirect.github.com/uber/h3-py/issues/443">#443</a>)</li>
</ul>
<h2>v4.2.0</h2>
<h2>[4.2.0] - 2025-01-26</h2>
<ul>
<li>Update h3lib to v4.2.0. (<a
href="https://redirect.github.com/uber/h3-py/issues/432">#432</a>)</li>
<li>Add <code>h3shape_to_cells_experimental</code> (<a
href="https://redirect.github.com/uber/h3-py/issues/436">#436</a>)
<ul>
<li>Add <code>polygon_to_cells_experimental</code> alias</li>
</ul>
</li>
</ul>
</blockquote>
</details>
<details>
<summary>Changelog</summary>
<p><em>Sourced from <a
href="https://github.com/uber/h3-py/blob/master/CHANGELOG.md">h3's
changelog</a>.</em></p>
<blockquote>
<h2>[4.2.1] - 2025-01-31</h2>
<ul>
<li>Correct pyproject.toml links for PyPI (<a
href="https://redirect.github.com/uber/h3-py/issues/441">#441</a>)</li>
<li>Update coverage badge (<a
href="https://redirect.github.com/uber/h3-py/issues/443">#443</a>)</li>
</ul>
<h2>[4.2.0] - 2025-01-26</h2>
<ul>
<li>Update h3lib to v4.2.0. (<a
href="https://redirect.github.com/uber/h3-py/issues/432">#432</a>)</li>
<li>Add <code>h3shape_to_cells_experimental</code> (<a
href="https://redirect.github.com/uber/h3-py/issues/436">#436</a>)
<ul>
<li>Add <code>polygon_to_cells_experimental</code> alias</li>
</ul>
</li>
</ul>
</blockquote>
</details>
<details>
<summary>Commits</summary>
<ul>
<li><a
href="https://github.com/uber/h3-py/commit/ae375a987c107b5bc2b4315db7d8957ede9ea026"><code>ae375a9</code></a>
fix links (<a
href="https://redirect.github.com/uber/h3-py/issues/444">#444</a>)</li>
<li><a
href="https://github.com/uber/h3-py/commit/259a915cdd988298d34e818ed8276208f968b9a7"><code>259a915</code></a>
Merge pull request <a
href="https://redirect.github.com/uber/h3-py/issues/443">#443</a> from
uber/isaacbrodsky-patch-1</li>
<li><a
href="https://github.com/uber/h3-py/commit/e02cd4f4f96c0dde35083de206a6d41db82596c0"><code>e02cd4f</code></a>
Update coverage badge in readme.md</li>
<li><a
href="https://github.com/uber/h3-py/commit/554aceef602ef07a99fe669e579caee7ebd3e6ff"><code>554acee</code></a>
Merge pull request <a
href="https://redirect.github.com/uber/h3-py/issues/441">#441</a> from
isaacbrodsky/update-pyproject-links</li>
<li><a
href="https://github.com/uber/h3-py/commit/ea05321c1d732527e64d9887b5e28fdfc2f4b3bb"><code>ea05321</code></a>
Fix pyproject.toml links</li>
<li><a
href="https://github.com/uber/h3-py/commit/e054120e1b314289526b8a42e04b9658f2e19123"><code>e054120</code></a>
Prep for v4.2.0 release (<a
href="https://redirect.github.com/uber/h3-py/issues/438">#438</a>)</li>
<li><a
href="https://github.com/uber/h3-py/commit/1ac484a8db1dcab37de80c3b4e73422c6bf90fc8"><code>1ac484a</code></a>
<code>h3shape_to_cells_experimental</code> takes string containment
modes (<a
href="https://redirect.github.com/uber/h3-py/issues/436">#436</a>)</li>
<li><a
href="https://github.com/uber/h3-py/commit/1dc5e5174064981d112434a9348b3ee2b1ebbdb6"><code>1dc5e51</code></a>
drop v4 announcement from readme (<a
href="https://redirect.github.com/uber/h3-py/issues/437">#437</a>)</li>
<li><a
href="https://github.com/uber/h3-py/commit/3d5b12a37071a09248389cafe8f45032c9a9a549"><code>3d5b12a</code></a>
Simplify coverage and lint actions v2 (<a
href="https://redirect.github.com/uber/h3-py/issues/435">#435</a>)</li>
<li><a
href="https://github.com/uber/h3-py/commit/ef6e8977316ae14eedb6fb17e8c9193dcc9d13c2"><code>ef6e897</code></a>
upgrade to h3 v4.2.0 (<a
href="https://redirect.github.com/uber/h3-py/issues/432">#432</a>)</li>
<li>Additional commits viewable in <a
href="https://github.com/uber/h3-py/compare/v4.1.2...v4.2.1">compare
view</a></li>
</ul>
</details>
<br />

Updates `pypdf` from 5.1.0 to 5.2.0
<details>
<summary>Release notes</summary>
<p><em>Sourced from <a
href="https://github.com/py-pdf/pypdf/releases">pypdf's
releases</a>.</em></p>
<blockquote>
<h2>Version 5.2.0, 2025-01-26</h2>
<h2>What's new</h2>
<h3>Deprecations (DEP)</h3>
<ul>
<li>Deprecate with replacement CCITParameters (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/3019">#3019</a>)
by <a href="https://github.com/j-t-1"><code>@​j-t-1</code></a></li>
<li>Correct deprecation of interiour_color (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/2947">#2947</a>)
by <a href="https://github.com/j-t-1"><code>@​j-t-1</code></a></li>
</ul>
<h3>New Features (ENH)</h3>
<ul>
<li>Support alternative (U)F names for embedded file retrieval (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/3072">#3072</a>)
by <a
href="https://github.com/stefan6419846"><code>@​stefan6419846</code></a></li>
<li>Adding support for reading .metadata.keywords (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/2939">#2939</a>)
by <a href="https://github.com/Lucas-C"><code>@​Lucas-C</code></a></li>
</ul>
<h3>Bug Fixes (BUG)</h3>
<ul>
<li>Handle further Tf operators in text extraction layout mode (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/3073">#3073</a>)
by <a
href="https://github.com/blushingpenguin"><code>@​blushingpenguin</code></a></li>
<li>Ensure <code>add_metadata</code> can deal with <code>_info =
None</code> (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/3040">#3040</a>)
by <a
href="https://github.com/xmo-odoo"><code>@​xmo-odoo</code></a></li>
<li>Handle IndirectObject in CCITTFaxDecode filter (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/2965">#2965</a>)
by <a
href="https://github.com/stefan6419846"><code>@​stefan6419846</code></a></li>
<li>Handle chained colorspace for inline images when no filter is set
(<a
href="https://redirect.github.com/py-pdf/pypdf/issues/3008">#3008</a>)
by <a
href="https://github.com/stefan6419846"><code>@​stefan6419846</code></a></li>
<li>Avoid extracting inline images twice and dropping other operators
(<a
href="https://redirect.github.com/py-pdf/pypdf/issues/3002">#3002</a>)
by <a
href="https://github.com/stefan6419846"><code>@​stefan6419846</code></a></li>
<li>Fixed reference of value with <code>str.__new__</code> in
TextStringObject (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/2952">#2952</a>)
by <a
href="https://github.com/thomas-forte"><code>@​thomas-forte</code></a></li>
<li>Handle indirect objects in font width calculations (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/2967">#2967</a>)
by <a href="https://github.com/nsw42"><code>@​nsw42</code></a></li>
<li>Title sometimes is bytes and not str (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/2930">#2930</a>)
by <a href="https://github.com/reformy"><code>@​reformy</code></a></li>
<li>Fix undefined variable for text extraction (regression) (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/2934">#2934</a>)
by <a
href="https://github.com/stefan6419846"><code>@​stefan6419846</code></a></li>
<li>Don't close stream passed to PdfWriter.write() (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/2909">#2909</a>)
by <a
href="https://github.com/alexaryn"><code>@​alexaryn</code></a></li>
</ul>
<h3>Robustness (ROB)</h3>
<ul>
<li>Handle zero height fonts when extracting text (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/3075">#3075</a>)
by <a
href="https://github.com/blushingpenguin"><code>@​blushingpenguin</code></a></li>
<li>Deal with content streams not containing streams (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/3005">#3005</a>)
by <a
href="https://github.com/stefan6419846"><code>@​stefan6419846</code></a></li>
<li>Gracefully handle some text operators when the operands are missing
(<a
href="https://redirect.github.com/py-pdf/pypdf/issues/3006">#3006</a>)
by <a
href="https://github.com/stefan6419846"><code>@​stefan6419846</code></a></li>
<li>Fall back to non-Adobe Ascii85 format for missing end markers (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/3007">#3007</a>)
by <a
href="https://github.com/stefan6419846"><code>@​stefan6419846</code></a></li>
<li>Ignore odd-length strings when processing cmap lines (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/3009">#3009</a>)
by <a
href="https://github.com/stefan6419846"><code>@​stefan6419846</code></a></li>
<li>Skip annotation destination being NullObject in PdfWriter (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/2964">#2964</a>)
by <a
href="https://github.com/stefan6419846"><code>@​stefan6419846</code></a></li>
<li>Skip destination page being None in PdfWriter (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/2963">#2963</a>)
by <a href="https://github.com/dxsooo"><code>@​dxsooo</code></a></li>
<li>Fix infinite loop case when reading null objects within an Array by
<a
href="https://github.com/jakep-allenai"><code>@​jakep-allenai</code></a></li>
<li>Fixing infinite loop in ArrayObject read_from_stream (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/2928">#2928</a>)
by <a
href="https://github.com/jakep-allenai"><code>@​jakep-allenai</code></a></li>
</ul>
<h3>Documentation (DOC)</h3>
<ul>
<li>Add note about default line colors (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/3014">#3014</a>)
by <a
href="https://github.com/stefan6419846"><code>@​stefan6419846</code></a></li>
</ul>
<h3>Developer Experience (DEV)</h3>
<ul>
<li>Remove ignoring Ruff rule PGH004 (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/3071">#3071</a>)
by <a href="https://github.com/j-t-1"><code>@​j-t-1</code></a></li>
<li>Tidy ignore array in tool.ruff.lint (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/3069">#3069</a>)
by <a href="https://github.com/j-t-1"><code>@​j-t-1</code></a></li>
<li>Move Windows CI to Python 3.13 (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/3003">#3003</a>)
by <a
href="https://github.com/stefan6419846"><code>@​stefan6419846</code></a></li>
<li>Move to Ubuntu 22.04 (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/3004">#3004</a>)
by <a
href="https://github.com/stefan6419846"><code>@​stefan6419846</code></a></li>
</ul>
<h3>Maintenance (MAINT)</h3>
<ul>
<li>Fix formatting of warning message and include exception message (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/3076">#3076</a>)
by <a
href="https://github.com/stefan6419846"><code>@​stefan6419846</code></a></li>
<li>Narrow return type for <code>ContentStream.operations</code> (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/2941">#2941</a>)
by <a
href="https://github.com/kmurphy4"><code>@​kmurphy4</code></a></li>
</ul>
<h3>Testing (TST)</h3>
<ul>
<li>Fix image similarity for upcoming Ubuntu 24.04 (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/3039">#3039</a>)
by <a
href="https://github.com/stefan6419846"><code>@​stefan6419846</code></a></li>
<li>Replace broken Apache Tika Corpora urls (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/3041">#3041</a>)
by <a
href="https://github.com/stefan6419846"><code>@​stefan6419846</code></a></li>
</ul>
<!-- raw HTML omitted -->
</blockquote>
<p>... (truncated)</p>
</details>
<details>
<summary>Changelog</summary>
<p><em>Sourced from <a
href="https://github.com/py-pdf/pypdf/blob/main/CHANGELOG.md">pypdf's
changelog</a>.</em></p>
<blockquote>
<h2>Version 5.2.0, 2025-01-26</h2>
<h3>Deprecations (DEP)</h3>
<ul>
<li>Deprecate with replacement CCITParameters (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/3019">#3019</a>)</li>
<li>Correct deprecation of interiour_color (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/2947">#2947</a>)</li>
</ul>
<h3>New Features (ENH)</h3>
<ul>
<li>Support alternative (U)F names for embedded file retrieval (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/3072">#3072</a>)</li>
<li>Adding support for reading .metadata.keywords (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/2939">#2939</a>)</li>
</ul>
<h3>Bug Fixes (BUG)</h3>
<ul>
<li>Handle further Tf operators in text extraction layout mode (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/3073">#3073</a>)</li>
<li>Ensure <code>add_metadata</code> can deal with <code>_info =
None</code> (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/3040">#3040</a>)</li>
<li>Handle IndirectObject in CCITTFaxDecode filter (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/2965">#2965</a>)</li>
<li>Handle chained colorspace for inline images when no filter is set
(<a
href="https://redirect.github.com/py-pdf/pypdf/issues/3008">#3008</a>)</li>
<li>Avoid extracting inline images twice and dropping other operators
(<a
href="https://redirect.github.com/py-pdf/pypdf/issues/3002">#3002</a>)</li>
<li>Fixed reference of value with <code>str.__new__</code> in
TextStringObject (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/2952">#2952</a>)</li>
<li>Handle indirect objects in font width calculations (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/2967">#2967</a>)</li>
<li>Title sometimes is bytes and not str (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/2930">#2930</a>)</li>
<li>Fix undefined variable for text extraction (regression) (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/2934">#2934</a>)</li>
<li>Don't close stream passed to PdfWriter.write() (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/2909">#2909</a>)</li>
</ul>
<h3>Robustness (ROB)</h3>
<ul>
<li>Handle zero height fonts when extracting text (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/3075">#3075</a>)</li>
<li>Deal with content streams not containing streams (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/3005">#3005</a>)</li>
<li>Gracefully handle some text operators when the operands are missing
(<a
href="https://redirect.github.com/py-pdf/pypdf/issues/3006">#3006</a>)</li>
<li>Fall back to non-Adobe Ascii85 format for missing end markers (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/3007">#3007</a>)</li>
<li>Ignore odd-length strings when processing cmap lines (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/3009">#3009</a>)</li>
<li>Skip annotation destination being NullObject in PdfWriter (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/2964">#2964</a>)</li>
<li>Skip destination page being None in PdfWriter (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/2963">#2963</a>)</li>
<li>Fix infinite loop case when reading null objects within an
Array</li>
<li>Fixing infinite loop in ArrayObject read_from_stream (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/2928">#2928</a>)</li>
</ul>
<h3>Documentation (DOC)</h3>
<ul>
<li>Add note about default line colors (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/3014">#3014</a>)</li>
</ul>
<h3>Developer Experience (DEV)</h3>
<ul>
<li>Remove ignoring Ruff rule PGH004 (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/3071">#3071</a>)</li>
<li>Tidy ignore array in tool.ruff.lint (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/3069">#3069</a>)</li>
<li>Move Windows CI to Python 3.13 (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/3003">#3003</a>)</li>
<li>Move to Ubuntu 22.04 (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/3004">#3004</a>)</li>
</ul>
<h3>Maintenance (MAINT)</h3>
<ul>
<li>Fix formatting of warning message and include exception message (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/3076">#3076</a>)</li>
<li>Narrow return type for <code>ContentStream.operations</code> (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/2941">#2941</a>)</li>
</ul>
<h3>Testing (TST)</h3>
<ul>
<li>Fix image similarity for upcoming Ubuntu 24.04 (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/3039">#3039</a>)</li>
<li>Replace broken Apache Tika Corpora urls (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/3041">#3041</a>)</li>
</ul>
<!-- raw HTML omitted -->
</blockquote>
<p>... (truncated)</p>
</details>
<details>
<summary>Commits</summary>
<ul>
<li><a
href="https://github.com/py-pdf/pypdf/commit/049f71e117917bec36009570717c1f38528b95f3"><code>049f71e</code></a>
REL: 5.2.0</li>
<li><a
href="https://github.com/py-pdf/pypdf/commit/b94d203e7bbaf70337675cce4ae319b5f454fdc4"><code>b94d203</code></a>
ENH: Support alternative (U)F names for embedded file retrieval (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/3072">#3072</a>)</li>
<li><a
href="https://github.com/py-pdf/pypdf/commit/ad97deb2ca2d63d29cff0b56879fa96e38413f76"><code>ad97deb</code></a>
DEV: Remove ignoring Ruff rule PGH004 (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/3071">#3071</a>)</li>
<li><a
href="https://github.com/py-pdf/pypdf/commit/493785c43a486f29bc021fee48cb363cb7c2bb59"><code>493785c</code></a>
ROB: Handle zero height fonts when extracting text (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/3075">#3075</a>)</li>
<li><a
href="https://github.com/py-pdf/pypdf/commit/afd7004abe763469ecf0f7414ad0aa922e884d64"><code>afd7004</code></a>
MAINT: Fix formatting of warning message and include exception message
(<a
href="https://redirect.github.com/py-pdf/pypdf/issues/3076">#3076</a>)</li>
<li><a
href="https://github.com/py-pdf/pypdf/commit/1401bcf8e9f1e5db40aeb321a2dba39d20e316c7"><code>1401bcf</code></a>
ROB: Deal with content streams not containing streams (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/3005">#3005</a>)</li>
<li><a
href="https://github.com/py-pdf/pypdf/commit/4dc3e90d634dd39548764ae2064bf08f8c2a3f07"><code>4dc3e90</code></a>
BUG: Handle further Tf operators in text extraction layout mode (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/3073">#3073</a>)</li>
<li><a
href="https://github.com/py-pdf/pypdf/commit/b5d5f360349592e4b589c80163d8397fc40c3d0a"><code>b5d5f36</code></a>
DEV: Update dev requirements and pre-commit configuration (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/2922">#2922</a>)</li>
<li><a
href="https://github.com/py-pdf/pypdf/commit/eec079d1b89d3d7113461c2aa17220db4c65273e"><code>eec079d</code></a>
DEV: Tidy ignore array in tool.ruff.lint (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/3069">#3069</a>)</li>
<li><a
href="https://github.com/py-pdf/pypdf/commit/f1b471b8dcbf763b39cdaada85ad0946acc51f0f"><code>f1b471b</code></a>
DEV: Remove TD004 from ignored Ruff rules (<a
href="https://redirect.github.com/py-pdf/pypdf/issues/3066">#3066</a>)</li>
<li>Additional commits viewable in <a
href="https://github.com/py-pdf/pypdf/compare/5.1.0...5.2.0">compare
view</a></li>
</ul>
</details>
<br />


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</details>

Author: VincentAntoine

datascience/poetry.lock

@@ -11,13 +11,13 @@ pandas = {extras = ["postgresql"], version = "^2.2.1"}
 black = "^24.3.0"
 isort = "^5.12.0"
 coverage = "^7.6.10"
-pre-commit = "^4.0.1"
+pre-commit = "^4.1.0"
 flake8 = "^7.1.1"
 python-dotenv = "^1.0.0"
 cx-oracle = "^8.3.0"
 scrapy = "^2.11.0"
 simplejson = "^3.19.2"
-geoalchemy2 = "^0.16.0"
+geoalchemy2 = "^0.17.0"
 rtree = "^1.0.1"
 jinja2 = "^3.1.5"
 pytz = "^2024.2"
@@ -30,8 +30,8 @@ css-inline = "^0.14.6"
 prefect = "^1.3"
 requests-mock = "^1.11.0"
 duckdb = "^0.10.1"
-h3 = "^4.1.2"
-pypdf = "^5.1.0"
+h3 = "^4.2.1"
+pypdf = "^5.2.0"
 fiona = "^1.10.1"