Update run command

Author: hkjeldsberg

docs/getting_started.md

@@ -23,13 +23,13 @@ Problems are solved by running the ``NSfracStepMove.py`` script, or by using the
 problem `DrivenCavity.py`, you can run the following command:
 
 ``` console
-$ oasism NSfracStepMove 
+$ oasismove NSfracStepMove 
 ```
 
 To specify a specific problem, you can run the following command:
 
 ``` console
-$ oasism NSfracStepMove problem=DrivenCavity 
+$ oasismove NSfracStepMove problem=DrivenCavity 
 ```
 
 ```{note}

docs/interpolation.md

@@ -16,14 +16,14 @@ problem. By default, the problem runs for $T=10$ using $\mathbb{P_1}$ elements,
 argument `velocity_degree=1`. Assume we have run the problem using the default parameters:
 
 ``` console
-$ oasism NSfracStep solver=IPCS_ABCN problem=DrivenCavity 
+$ oasismove NSfracStep solver=IPCS_ABCN problem=DrivenCavity 
 ```
 
 To restart and continue the simulation until $T=20$ using $\mathbb{P_2}$ elements, we may simply pass
 the `velocity_degree=2` argument, in addition to the required parameters for restarting a simulation:
 
 ``` console
-$ oasism NSfracStep solver=IPCS_ABCN problem=DrivenCavity velocity_degree=2 restart_folder=results_driven_cavity/data/1/Checkpoint T=20 
+$ oasismove NSfracStep solver=IPCS_ABCN problem=DrivenCavity velocity_degree=2 restart_folder=results_driven_cavity/data/1/Checkpoint T=20 
 ```
 
 Note that the ability to interpolate to a higher function space can be computation-intensive, especially for large

docs/movingcylinder.md

@@ -58,13 +58,13 @@ To run the oscillating cylinder problem for $T=5$ seconds with default parameter
 command:
 
 ``` console
-$ oasism NSfracStepMove problem=MovingCylinder Re=500 u_inf=1.0 F=1.0 T=5 mesh_path=src/oasismove/mesh/cylinder.xdmf
+$ oasismove NSfracStepMove problem=MovingCylinder Re=500 u_inf=1.0 F=1.0 T=5 mesh_path=src/oasismove/mesh/cylinder.xdmf
 ```
 
 or without explicitly writing the default parameters:
 
 ``` console
-$ oasism NSfracStepMove problem=MovingCylinder mesh_path=src/oasismove/mesh/cylinder.xdmf
+$ oasismove NSfracStepMove problem=MovingCylinder mesh_path=src/oasismove/mesh/cylinder.xdmf
 ```
 
 and the simulation will start. The default time step is relatively small, so the simulation might take some minutes
@@ -108,7 +108,7 @@ adjusted by adding it as a command line argument. For instance, we can run a sim
 following command:
 
 ``` console
-$ oasism NSfracStepMove problem=MovingCylinder Re=100 mesh_path=src/oasismove/mesh/cylinder.xdmf
+$ oasismove NSfracStepMove problem=MovingCylinder Re=100 mesh_path=src/oasismove/mesh/cylinder.xdmf
 ```
 
 As an example of adjusting the Reynolds number, we have run the simulation using $Re=1, 20, 100,$ and $500$. In

docs/movingtg.md

@@ -51,7 +51,7 @@ the box mesh. By default, the Reynolds number is set to Re = $1/\nu=1600$.
 To simulate this flow problem in OasisMove using the default parameters, run the following command:
 
 ``` console
-$ oasism NSfracStepMove problem=MovingTaylorGreen3D
+$ oasismove NSfracStepMove problem=MovingTaylorGreen3D
 ```
 
 and the simulation will start. Since this problem is in three dimensions, there will be an additional set of equations
@@ -61,7 +61,7 @@ OasisMove supports. Thus, to decrease the computational time by utilizing high p
 of OasisMove, can run the following command:
 
 ``` console
-$ mpirun -np 16 oasism NSfracStepMove problem=MovingTaylorGreen3D
+$ mpirun -np 16 oasismove NSfracStepMove problem=MovingTaylorGreen3D
 ```
 
 ## Results
@@ -95,7 +95,7 @@ parameters as command-line arguments to change their value. For instance, to cre
 we can run the following command:
 
 ``` console
-$ oasism NSfracStepMove problem=MovingTaylorGreen3D Nx=50 Ny=50 Nz=50
+$ oasismove NSfracStepMove problem=MovingTaylorGreen3D Nx=50 Ny=50 Nz=50
 ```
 
 ## References

docs/movingvortex.md

@@ -39,7 +39,7 @@ length of the mesh motion, $T$ is the length of one cycle, and $L=1$.
 To simulate this flow problem in OasisMove using the default parameters you can run the following command:
 
 ``` console
-$ oasism NSfracStepMove problem=MovingVortex 
+$ oasismove NSfracStepMove problem=MovingVortex 
 ```
 
 and the simulation will start. The simulation should only take a couple of seconds when running with the default
@@ -69,15 +69,15 @@ parameters as command-line arguments to change their value. For instance, to cre
 can run the following command:
 
 ``` console
-$ oasism NSfracStepMove problem=MovingVortex Nx=100 Ny=100
+$ oasismove NSfracStepMove problem=MovingVortex Nx=100 Ny=100
 ```
 
 Similarly, we can adjust the number of time steps the simulation should perform by adjusting the time step
 parameter `dt`, which by default is $\Delta t = 5\cdot 10^{-2}$. To simulate 1000 time steps between $t=0$ and $t=T=1$,
 we can run the following command:
 
 ``` console
-$ oasism NSfracStepMove problem=MovingVortex T=1 dt=0.001
+$ oasismove NSfracStepMove problem=MovingVortex T=1 dt=0.001
 ```
 
 ```{important}

docs/movingwall.md

@@ -36,7 +36,7 @@ To run the wall-driven channel flow problem for $T=1$ seconds with the default p
 following command:
 
 ``` console
-$ oasism NSfracStepMove problem=MovingWall
+$ oasismove NSfracStepMove problem=MovingWall
 ```
 
 and the simulation will start. The default time step size is set to $\Delta t=0.005$, thus a full simulation performs

docs/restart.md

@@ -18,7 +18,7 @@ problem. For this problem, the default values are $T=10$, a time step of $\Delta
 time step (`checkpoint=500`). Assume we have run the problem using the following command:
 
 ``` console
-$ oasism NSfracStep solver=IPCS_ABCN problem=DrivenCavity 
+$ oasismove NSfracStep solver=IPCS_ABCN problem=DrivenCavity 
 ```
 
 After 500 time steps, or when the simulation is finished, there will be located a `Checkpoint` folder within
@@ -33,7 +33,7 @@ prematurely, we may restart the simulation by adding the  `restart_folder` param
 the `Checkpoint` folder:
 
 ``` console
-$ oasism NSfracStep solver=IPCS_ABCN problem=DrivenCavity restart_folder=results_driven_cavity/data/1/Checkpoint 
+$ oasismove NSfracStep solver=IPCS_ABCN problem=DrivenCavity restart_folder=results_driven_cavity/data/1/Checkpoint 
 ```
 
 The simulation should now restart at the latest checkpoint, and continue as normal until $T=10.
@@ -46,7 +46,7 @@ to the `Checkpoint` folder, and a new end-time ($T$) for the simulation. With a
 the `DrivenCavity` problem and continue running it until $T=20$ with the following command:
 
 ``` console
-$ oasism NSfracStep solver=IPCS_ABCN problem=DrivenCavity T=20 restart_folder=results_driven_cavity/data/1/Checkpoint  
+$ oasismove NSfracStep solver=IPCS_ABCN problem=DrivenCavity T=20 restart_folder=results_driven_cavity/data/1/Checkpoint  
 ```
 
 The simulation should now restart at $T=10$, and continue running until $T=20$.

docs/stenosis.md

@@ -72,7 +72,7 @@ boundary ID is 3, backflow stabilization can be added to the outlet with a stren
 command:
 
 ``` console
-$ oasism NSfracStep solver=IPCS_ABCN problem=Stenosis backflow_facets="[3]" backflow_beta=0.2 
+$ oasismove NSfracStep solver=IPCS_ABCN problem=Stenosis backflow_facets="[3]" backflow_beta=0.2 
 ```
 
 Note that the list of boundaries has to be encapsulated by quotation marks, or the IDs can be manually set
@@ -86,22 +86,22 @@ To run the stenosis problem for $T=15$ with default parameters in OasisMove, whi
 stabilization at the outlet, you can run the following command:
 
 ``` console
-$ oasism NSfracStep solver=IPCS_ABCN problem=Stenosis 
+$ oasismove NSfracStep solver=IPCS_ABCN problem=Stenosis 
 ```
 
 where we specify the `NSfracStep` module and `IPCS_ABCN` solver because the problem is not moving. Alternatively we can
 pass the `dynamic_mesh=False` flag for rigid domain problems, telling the default solver (`IPCS_ABCN_Move`) to skip
 solving the mesh equations:
 
 ``` console
-$ oasism NSfracStepMove problem=Stenosis dynamic_mesh=False 
+$ oasismove NSfracStepMove problem=Stenosis dynamic_mesh=False 
 ```
 
 The default time step is set to $T=15$ and might take some minutes to complete, depending on your hardware.
 Alternatively, you can solve the problem in parallel to speed up the simulation time:
 
 ``` console
-$ mpirun -np 8 oasism NSfracStepMove problem=Stenosis dynamic_mesh=False 
+$ mpirun -np 8 oasismove NSfracStepMove problem=Stenosis dynamic_mesh=False 
 ```
 
 ## Results

pyproject.toml

@@ -10,7 +10,7 @@ license = { file = "LICENSE" }
 readme = "README.md"
 
 [project.scripts]
-oasism = "oasismove.run_oasis:main"
+oasismove = "oasismove.run_oasis:main"
 
 [project.optional-dependencies]
 test = [