-
Notifications
You must be signed in to change notification settings - Fork 4
/
Copy pathfield_test.jl
137 lines (107 loc) · 4.86 KB
/
field_test.jl
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
using PlanktonIndividuals.Fields
using PlanktonIndividuals.Biogeochemistry
function test_fields()
grid = RectilinearGrid(size = (4,6,2), x = (0,12), y = (0,12), z = (0,-8))
nut = nutrients_init(CPU(), grid)
@test Tuple(collect(keys(nut))) == nut_names
@test nut.DIC.data == zeros(8,10,6)
@test interior(nut.DIC.data, grid) == zeros(4,6,2)
nuts = generate_nutrients(CPU(), grid, default_nut_init(), Float32)
@test maximum(nuts.DIC.data) < 23.0
@test minimum(nuts.DIC.data) > 17.0
zero_fields!(nuts)
@test nuts.DIC.data == zeros(8,10,6)
return nothing
end
function test_fill_halos()
grid = RectilinearGrid(size = (4,6,2), x = (0,12), y = (0,12), z = (0,-8))
nuts = generate_nutrients(CPU(), grid, default_nut_init(), Float32)
Nx,Ny,Nz = grid.Nx, grid.Ny, grid.Nz
Hx,Hy,Hz = grid.Hx, grid.Hy, grid.Hz
PlanktonIndividuals.Fields.fill_halo_east!(nuts.DIC.data, Hx, Nx, Periodic())
@test nuts.DIC.data[Nx+Hx+1:Nx+2*Hx, :, :] == nuts.DIC.data[1+Hx:2*Hx, :, :]
PlanktonIndividuals.Fields.fill_halo_west!(nuts.DIC.data, Hx, Nx, Periodic())
@test nuts.DIC.data[1:Hx, :, :] == nuts.DIC.data[Nx+1:Nx+Hx, :, :]
PlanktonIndividuals.Fields.fill_halo_north!(nuts.DIC.data, Hy, Ny, Periodic())
@test nuts.DIC.data[:, Ny+Hy+1:Ny+2*Hy, :] == nuts.DIC.data[:, 1+Hy:2*Hy, :]
PlanktonIndividuals.Fields.fill_halo_south!(nuts.DIC.data, Hy, Ny, Periodic())
@test nuts.DIC.data[:, 1:Hy, :] == nuts.DIC.data[:, Ny+1:Ny+Hy, :]
PlanktonIndividuals.Fields.fill_halo_bottom!(nuts.DIC.data, Hz, Nz, Periodic())
@test nuts.DIC.data[:, :, Nz+Hz+1:Nz+2*Hz] == nuts.DIC.data[:, :, 1+Hz:2*Hz]
PlanktonIndividuals.Fields.fill_halo_top!(nuts.DIC.data, Hz, Nz, Periodic())
@test nuts.DIC.data[:, :, 1:Hz] == nuts.DIC.data[:, :, Nz+1:Nz+Hz]
PlanktonIndividuals.Fields.fill_halo_east!(nuts.DIC.data, Hx, Nx, Bounded())
for i in 1:Hx
@test nuts.DIC.data[Nx+Hx+i, :, :] == nuts.DIC.data[Nx+Hx, :, :]
end
PlanktonIndividuals.Fields.fill_halo_west!(nuts.DIC.data, Hx, Nx, Bounded())
for i in 1:Hx
@test nuts.DIC.data[i, :, :] == nuts.DIC.data[Hx+1, :, :]
end
PlanktonIndividuals.Fields.fill_halo_north!(nuts.DIC.data, Hy, Ny, Bounded())
for i in 1:Hy
@test nuts.DIC.data[:, Ny+Hy+i, :] == nuts.DIC.data[:, Ny+Hy, :]
end
PlanktonIndividuals.Fields.fill_halo_south!(nuts.DIC.data, Hy, Ny, Bounded())
for i in 1:Hy
@test nuts.DIC.data[:, i, :] == nuts.DIC.data[:, Hy+1, :]
end
PlanktonIndividuals.Fields.fill_halo_bottom!(nuts.DIC.data, Hz, Nz, Bounded())
for i in 1:Hz
@test nuts.DIC.data[:, :, Nz+Hz+i] == nuts.DIC.data[:, :, Nz+Hz]
end
PlanktonIndividuals.Fields.fill_halo_top!(nuts.DIC.data, Hz, Nz, Bounded())
for i in 1:Hz
@test nuts.DIC.data[:, :, i] == nuts.DIC.data[:, :, Hz+1]
end
PlanktonIndividuals.Fields.fill_halo_east_vel!(nuts.DIC.data, Hx, Nx, Bounded())
for i in 1:Hx-1
@test nuts.DIC.data[Nx+Hx+1+i, :, :] == nuts.DIC.data[Nx+Hx+1, :, :]
end
PlanktonIndividuals.Fields.fill_halo_north_vel!(nuts.DIC.data, Hy, Ny, Bounded())
for i in 1:Hy-1
@test nuts.DIC.data[:, Ny+Hx+1+i, :] == nuts.DIC.data[:, Ny+Hy+1, :]
end
PlanktonIndividuals.Fields.fill_halo_bottom_vel!(nuts.DIC.data, Hz, Nz, Bounded())
for i in 1:Hz-1
@test nuts.DIC.data[:, :, Nz+Hx+1+i] == nuts.DIC.data[:, :, Nz+Hz+1]
end
PlanktonIndividuals.Fields.fill_halo_east_Gc!(nuts.DIC.data, Hx, Nx, Bounded())
for i in 1:Hx
@test nuts.DIC.data[Nx+Hx+i, :, :] == zeros(10,6)
end
PlanktonIndividuals.Fields.fill_halo_north_Gc!(nuts.DIC.data, Hy, Ny, Bounded())
for i in 1:Hy
@test nuts.DIC.data[:, Ny+Hx+i, :] == zeros(8,6)
end
PlanktonIndividuals.Fields.fill_halo_bottom_Gc!(nuts.DIC.data, Hz, Nz, Bounded())
for i in 1:Hz
@test nuts.DIC.data[:, :, Nz+Hx+i] == zeros(8,10)
end
return nothing
end
function test_boundary_conditions()
grid = RectilinearGrid(size = (4, 4, 4), x = (0,32), y = (0,32), z = (0,-32))
model = PlanktonModel(CPU(), grid; mode = CarbonMode())
FT = model.FT
set_bc!(model; tracer = :DIC, pos = :west, bc_value = 0.1)
@test model.nutrients.DIC.bc.west == FT(0.1)
set_bc!(model; tracer = :DIC, pos = :west, bc_value = ones(4,4))
@test model.nutrients.DIC.bc.west == ones(FT, 4,4)
set_bc!(model; tracer = :DIC, pos = :west, bc_value = ones(4,4,10))
@test model.nutrients.DIC.bc.west == ones(FT, 4,4,10)
Gcs = nutrients_init(CPU(), grid)
apply_bcs!(Gcs, model.nutrients, model.grid, 10, 1, CPU())
@test Gcs.DIC.data[3,3:6,3:6] == ones(FT, 4,4) ./ FT(8.0)
end
@testset "Fields" begin
@testset "Fields" begin
test_fields()
end
@testset "Fill halos" begin
test_fill_halos()
end
@testset "Boundary conditions" begin
test_boundary_conditions()
end
end