Releases · JetBrains-Research/span

Version 0.11.0

Released on May 17th, 2019

If the model file is present, Span can now call and tune peaks with no further options required
If the options are nevertheless provided, they're checked against those stored in the model file
Span recognizes explicit options --fragment auto and --keep-dup false (previously, the user had to
omit the options to achieve this result)
Reduced statistical data model convergence time
Changed model initial point
Multistart for model fittingc
Safeguards against NB parameters vanishing for small signal-to-noise ratio or insufficient number of reads

Version 0.10.0

Released on March 22, 2019

ATAC-Seq support - --fragment 0 option works correctly in paired end reads case

Single Cell ATAC-Seq supported - --keep-dup options allows duplicated alignments in same position

SPAN model name can be configured explicitly by --model, default name is more user friendly

SPAN doesn't ignore contigs (alternative, random) chromosomes in peak calling anymore