Merge branch 'main' into fix-9668

Author: Siedlerchr

.github/PULL_REQUEST_TEMPLATE.md

@@ -11,9 +11,12 @@ The title of the PR must not reference an issue, because GitHub does not support
 - [x] done; [ ] not done / not applicable
 -->
 
+```[tasklist]
+### Compulsory checks
 - [ ] Change in `CHANGELOG.md` described in a way that is understandable for the average user (if applicable)
 - [ ] Tests created for changes (if applicable)
 - [ ] Manually tested changed features in running JabRef (always required)
 - [ ] Screenshots added in PR description (for UI changes)
 - [ ] [Checked developer's documentation](https://devdocs.jabref.org/): Is the information available and up to date? If not, I outlined it in this pull request.
 - [ ] [Checked documentation](https://docs.jabref.org/): Is the information available and up to date? If not, I created an issue at <https://github.com/JabRef/user-documentation/issues> or, even better, I submitted a pull request to the documentation repository.
+```

CHANGELOG.md

@@ -24,8 +24,10 @@ Note that this project **does not** adhere to [Semantic Versioning](http://semve
 
 - 'Get full text' now also checks the file url. [#568](https://github.com/koppor/jabref/issues/568)
 - `log.txt` now contains an entry if a BibTeX entry could not be parsed.
+- JabRef writes a new backup file only if there is a change. Before, JabRef created a backup upon start. [#9679](https://github.com/JabRef/jabref/pull/9679)
 - We refined the 'main directory not found' error message. [#9625](https://github.com/JabRef/jabref/pull/9625)
 - We modified the `Add Group` dialog to use the most recently selected group hierarchical context [#9141](https://github.com/JabRef/jabref/issues/9141)
+- We improved the Medline importer to correctly import ISO dates for `revised`. [#9536](https://github.com/JabRef/jabref/issues/9536)
 
 
 

build.gradle

@@ -259,7 +259,6 @@ processResources {
 
 task generateSource(dependsOn: ["generateBstGrammarSource",
                                 "generateSearchGrammarSource",
-                                "generateMedlineSource",
                                 "generateBibtexmlSource",
                                 "generateEndnoteSource",
                                 "generateModsSource",
@@ -290,15 +289,6 @@ tasks.register("generateSearchGrammarSource", JavaExec) {
     args  = ["-o","src-gen/main/java/org/jabref/search" , "-visitor", "-no-listener", "-package", "org.jabref.search", "$projectDir/src/main/antlr4/org/jabref/search/Search.g4"]
 }
 
-task generateMedlineSource(type: XjcTask) {
-    group = 'JabRef'
-    description = "Generates java files for the medline importer."
-
-    schemaFile = "src/main/resources/xjc/medline/medline.xsd"
-    outputDirectory = "src-gen/main/java"
-    javaPackage = "org.jabref.logic.importer.fileformat.medline"
-}
-
 task generateBibtexmlSource(type: XjcTask) {
     group = 'JabRef'
     description = "Generates java files for the bibtexml importer."

docs/Gemfile

@@ -5,7 +5,7 @@ gem "jekyll", "~> 4.3" # installed by `gem jekyll`
 # Homepage: https://github.com/paulrobertlloyd/jekyll-figure#jekyll-figure
 gem 'jekyll-figure'
 
-gem "just-the-docs", "0.4.0.rc3"
+gem "just-the-docs", "0.4.2"
 
 gem "jekyll-remote-theme"
 

src/main/java/org/jabref/logic/autosaveandbackup/BackupManager.java

@@ -64,7 +64,7 @@ public class BackupManager {
     // During a write, the less recent backup file is deleted
     private final Queue<Path> backupFilesQueue = new LinkedBlockingQueue<>();
 
-    private boolean needsBackup = true;
+    private boolean needsBackup = false;
 
     BackupManager(BibDatabaseContext bibDatabaseContext, BibEntryTypesManager entryTypesManager, PreferencesService preferences) {
         this.bibDatabaseContext = bibDatabaseContext;

src/main/java/org/jabref/logic/importer/fileformat/MedlineImporter.java

@@ -0,0 +1,7 @@
+package org.jabref.logic.importer.fileformat.medline;
+
+public record ArticleId(
+        String idType,
+        String content
+) {
+}

src/main/java/org/jabref/logic/importer/fileformat/medline/ArticleId.java

@@ -0,0 +1,10 @@
+package org.jabref.logic.importer.fileformat.medline;
+
+import java.util.List;
+
+public record Investigator(
+        String lastName,
+        String foreName,
+        List<String> affiliationList
+) {
+}

src/main/java/org/jabref/logic/importer/fileformat/medline/Investigator.java

@@ -0,0 +1,9 @@
+package org.jabref.logic.importer.fileformat.medline;
+
+import java.util.List;
+
+public record MeshHeading(
+        String descriptorName,
+        List<String> qualifierNames
+) {
+}

src/main/java/org/jabref/logic/importer/fileformat/medline/MeshHeading.java

@@ -0,0 +1,7 @@
+package org.jabref.logic.importer.fileformat.medline;
+
+public record OtherId(
+        String source,
+        String content
+) {
+}

src/main/java/org/jabref/logic/importer/fileformat/medline/OtherId.java

@@ -0,0 +1,7 @@
+package org.jabref.logic.importer.fileformat.medline;
+
+public record PersonalNameSubject(
+        String lastName,
+        String foreName
+) {
+}