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Javier Garcia Ordonez
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reboot w new cookiecutter version ++ lots of fixes
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‎.cookiecutterrc

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# This file exists so you can easily regenerate your project.
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#
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# `cookiepatcher` is a convenient shim around `cookiecutter`
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# for regenerating projects (it will generate a .cookiecutterrc
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# automatically for any template). To use it:
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#
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# pip install cookiepatcher
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# cookiepatcher gh:itisfoundation/cookiecutter-osparc-service project-path
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#
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# See:
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# https://pypi.python.org/pypi/cookiepatcher
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#
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# Alternatively, you can run:
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#
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# cookiecutter --overwrite-if-exists --config-file=project-path/.cookiecutterrc gh:itisfoundation/cookiecutter-osparc-service
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#
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default_context:
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_checkout: 'work/jgo/new-service-integration-library'
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_output_dir: '/home/ordonez/osparc-services'
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_repo_dir: '/home/ordonez/.cookiecutters/cookiecutter-osparc-service'
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_template: 'gh:ITISFoundation/cookiecutter-osparc-service'
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author_affiliation: 'ITIS Foundation'
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author_email: '[email protected]'
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author_name: 'Lucia Moya Sans'
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contact_email: '[email protected]'
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default_docker_registry: 'itisfoundation'
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docker_base: 'python:3.11'
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git_repo: 'github'
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git_username: 'lmoyasans'
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number_of_inputs: '1'
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number_of_outputs: '1'
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project_name: 'pymorphosonic'
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project_package_name: 'pymorphosonic'
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project_short_description: 'pymorphosonic'
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project_slug: 'pymorphosonic'
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project_type: 'computational'
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release_date: '2025'
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version: '0.1.0'
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version_display: '0.1.0'

‎.dockerignore

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## Common.dockerignore
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*
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!src/
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!service.cli/
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!docker/
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!.osparc/
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# Common
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README.md
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CHANGELOG.md
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docker-compose.yml
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Dockerfile
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# git
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.git
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.gitattributes
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.gitignore
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.git*
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## Common.gitignore
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# output folders
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build/
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output/
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out/
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# temporary folders
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tmp/
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# explicit mark
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*ignore*
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.tmp*
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# vscode configuration
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.vscode
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# make outputs
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pytest_*.xml
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.compose*
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# validation folder
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!validation/**/*
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# docker ignore
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!.dockerignore
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# git ignore
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!.gitignore
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## Python.gitignore
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# FROM https://raw.githubusercontent.com/github/gitignore/main/Python.gitignore
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# Byte-compiled / optimized / DLL files
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__pycache__/
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*.py[cod]
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*$py.class
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# C extensions
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*.so
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# Distribution / packaging
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.Python
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build/
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develop-eggs/
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dist/
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downloads/
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eggs/
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.eggs/
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lib/
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lib64/
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parts/
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sdist/
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var/
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wheels/
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share/python-wheels/
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*.egg-info/
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.installed.cfg
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*.egg
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MANIFEST
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# PyInstaller
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# Usually these files are written by a python script from a template
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# before PyInstaller builds the exe, so as to inject date/other infos into it.
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*.manifest
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*.spec
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# Installer logs
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pip-log.txt
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pip-delete-this-directory.txt
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# Unit test / coverage reports
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htmlcov/
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.tox/
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.nox/
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.coverage
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.coverage.*
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.cache
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nosetests.xml
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coverage.xml
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*.cover
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*.py,cover
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.hypothesis/
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.pytest_cache/
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cover/
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# Translations
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*.mo
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*.pot
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# Django stuff:
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*.log
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local_settings.py
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db.sqlite3
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db.sqlite3-journal
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# Flask stuff:
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instance/
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.webassets-cache
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# Scrapy stuff:
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.scrapy
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# Sphinx documentation
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docs/_build/
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# PyBuilder
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.pybuilder/
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target/
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# Jupyter Notebook
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.ipynb_checkpoints
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# IPython
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profile_default/
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ipython_config.py
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# pyenv
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# For a library or package, you might want to ignore these files since the code is
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# intended to run in multiple environments; otherwise, check them in:
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# .python-version
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# pipenv
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# According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
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# However, in case of collaboration, if having platform-specific dependencies or dependencies
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# having no cross-platform support, pipenv may install dependencies that don't work, or not
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# install all needed dependencies.
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#Pipfile.lock
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# poetry
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# Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control.
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# This is especially recommended for binary packages to ensure reproducibility, and is more
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# commonly ignored for libraries.
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# https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control
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#poetry.lock
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# pdm
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# Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control.
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#pdm.lock
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# pdm stores project-wide configurations in .pdm.toml, but it is recommended to not include it
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# in version control.
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# https://pdm.fming.dev/#use-with-ide
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.pdm.toml
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# PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm
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__pypackages__/
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# Celery stuff
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celerybeat-schedule
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celerybeat.pid
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# SageMath parsed files
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*.sage.py
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# Environments
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.env
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.venv
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env/
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venv/
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ENV/
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env.bak/
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venv.bak/
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# Spyder project settings
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.spyderproject
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.spyproject
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# Rope project settings
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.ropeproject
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# mkdocs documentation
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/site
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# mypy
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.mypy_cache/
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.dmypy.json
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dmypy.json
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# Pyre type checker
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.pyre/
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# pytype static type analyzer
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.pytype/
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# Cython debug symbols
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cython_debug/
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# PyCharm
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# JetBrains specific template is maintained in a separate JetBrains.gitignore that can
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# be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore
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# and can be added to the global gitignore or merged into this file. For a more nuclear
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# option (not recommended) you can uncomment the following to ignore the entire idea folder.
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#.idea/

‎.github/dockerhub_login.bash

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#!/bin/bash
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# http://redsymbol.net/articles/unofficial-bash-strict-mode/
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set -euo pipefail
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IFS=$'\n\t'
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# check needed variables are defined
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if [ ! -v DOCKER_USERNAME ] ||\
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[ ! -v DOCKER_PASSWORD ] ||\
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[ ! -v DOCKER_REGISTRY ]; then
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echo "## ERROR: Please define the environs (DOCKER_USERNAME, DOCKER_PASSWORD, DOCKER_REGISTRY) in your CI settings!"
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exit 1
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fi
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# check script needed variables
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if [ ! -v OWNER ]; then
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echo "## ERROR: incorrect usage of CI. OWNER (e.g. dockerhub organization like itisfoundation or user private name) not defined!"
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exit 1
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fi
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# only upstream is allowed to push to itisfoundation repo
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if [ "${OWNER,,}" != "itisfoundation" ] &&\
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{ [ ! -v DOCKER_REGISTRY ] || [ -z "${DOCKER_REGISTRY}" ] || [ "$DOCKER_REGISTRY" = "itisfoundation" ]; }; then
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echo "## ERROR: it is not allowed to push to the main dockerhub repository from a fork!"
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echo "## Please adapt your CI-defined environs (DOCKER_USERNAME, DOCKER_PASSWORD, DOCKER_REGISTRY)"
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exit 1
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fi
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# these variable must be available securely from the CI
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echo "$DOCKER_PASSWORD" | docker login -u "$DOCKER_USERNAME" --password-stdin
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echo "logged into dockerhub successfully, ready to push"
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exit 0

‎.github/show_system_versions.bash

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#!/bin/bash
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# http://redsymbol.net/articles/unofficial-bash-strict-mode/
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set -euo pipefail
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IFS=$'\n\t'
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echo "------------------------------ environs -----------------------------------"
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env
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echo "------------------------------ uname -----------------------------------"
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uname -a
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lsb_release -a
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echo "------------------------------ python -----------------------------------"
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if command -v python; then
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python --version
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fi
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echo "------------------------------ python3 -----------------------------------"
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if command -v python3; then
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python3 --version
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fi
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echo "------------------------------ docker -----------------------------------"
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if command -v docker; then
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docker version
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fi
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echo "------------------------------ docker-compose -----------------------------------"
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if command -v docker-compose; then
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docker-compose version
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fi

‎.github/workflows/check-image.yml

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name: Build and check image
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on: [push, pull_request]
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jobs:
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verify-image-build:
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runs-on: ubuntu-latest
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steps:
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- name: Checkout repo content
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uses: actions/checkout@v2
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- name: ooil version
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uses: docker://itisfoundation/ci-service-integration-library:latest
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with:
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args: ooil --version
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- name: Assemble docker compose spec
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uses: docker://itisfoundation/ci-service-integration-library:latest
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with:
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args: ooil compose
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- name: Build all images if multiple
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uses: docker://itisfoundation/ci-service-integration-library:latest
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with:
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args: docker compose build

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