Failed to precompile in polyglot quarto notebook using knitr engine

[danlooo]

Quarto enables polyglot notebooks to create Documentation about julia and bash commands. We need to use kntr engine for that. Cell rendering works until RQADeforestation is getting precompiled:

Error in quarto render foo.qmd:

ERROR: LoadError: InitError: could not load library "/home/dloos/.julia/artifacts/2829a1f6a9ca59e5b9b53f52fa6519da9c9fd7d3/lib/libhdf5.so"
/usr/lib/x86_64-linux-gnu/libcurl.so.4: version `CURL_4' not found (required by /home/dloos/.julia/artifacts/2829a1f6a9ca59e5b9b53f52fa6519da9c9fd7d3/lib/libhdf5.so)

because of ArchGDAL:

ERROR: LoadError: Failed to precompile ArchGDAL [c9ce4bd3-c3d5-55b8-8973-c0e20141b8c3] to "/home/dloos/.julia/compiled/v1.11/ArchGDAL/jl_hnNByk".

because of:

Failed to precompile RQADeforestation

[felixcremer]

This might be similar to JuliaPy/PythonCall.jl#397.
Have you tried setting eval to false for all bash cells?

[danlooo]

Fixed after activating a fresh Julia env. Maybe JuliaCall::julia_setup(JULIA_HOME = "/home/dloos/.juliaup/bin/", rebuild=TRUE) did also its job.